CN189704

Overview
NameCN189704
Unique NameCN189704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHSH_ARATH (Alpha-glucan phosphorylase, H isozyme OS=Arabidopsis thaliana GN=At3g46970 PE=2 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.414e-74
Identity = 130/148 (87.84%), Postives = 141/148 (95.27%), Query Frame = -2
Query:  257 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITEC 700
            NGCLIIGTLDGANVEIR+E+GEENFFLFGA A+QVP+LRKEREDGLFKPDPRFEEAKQF++SG FGSYDY PLLDSLEGNTG+GRGDYFLVGYDFPSY++AQ +VD+AYKDRK WLKMSILSTAGSGKFSSDRTIAQYAKEIWNI  C
Sbjct:  691 NGCLIIGTLDGANVEIREEVGEENFFLFGATADQVPRLRKEREDGLFKPDPRFEEAKQFVKSGVFGSYDYGPLLDSLEGNTGFGRGDYFLVGYDFPSYMDAQAKVDEAYKDRKGWLKMSILSTAGSGKFSSDRTIAQYAKEIWNIEAC 838          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHSH_SOLTU (Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.847e-74
Identity = 128/149 (85.91%), Postives = 146/149 (97.99%), Query Frame = -2
Query:  254 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 700
            NGCLIIGTLDGANVEIR+EIGE+NFFLFGA A++VP+LRK+RE+GLFKPDPRFEEAKQFIRSGAFG+YDYNPLL+SLEGN+GYGRGDYFLVG+DFPSY++AQ RVD+AYKDRK+W+KMSILST+GSGKFSSDRTI+QYAKEIWNI ECR
Sbjct:  688 NGCLIIGTLDGANVEIREEIGEDNFFLFGATADEVPQLRKDRENGLFKPDPRFEEAKQFIRSGAFGTYDYNPLLESLEGNSGYGRGDYFLVGHDFPSYMDAQARVDEAYKDRKRWIKMSILSTSGSGKFSSDRTISQYAKEIWNIAECR 836          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHSH_VICFA (Alpha-glucan phosphorylase, H isozyme OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 276.944 bits (707), Expect = 7.019e-74
Identity = 129/149 (86.58%), Postives = 144/149 (96.64%), Query Frame = -2
Query:  254 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITECR 700
            N  LIIGTLDGANVEIR+EIGEENFFLFGA A++VP+LRKERE+GLFKPDPRFEEAK+FIRSG FGSYDYNPLLDSLEGN+GYGRGDYFLVGYDFPSY++AQ++VD+AY+D+K+WLKMSILSTAGSGKFSSDRTIAQYAKEIWNI ECR
Sbjct:  692 NRVLIIGTLDGANVEIREEIGEENFFLFGATADEVPRLRKERENGLFKPDPRFEEAKKFIRSGVFGSYDYNPLLDSLEGNSGYGRGDYFLVGYDFPSYMDAQEKVDEAYRDKKRWLKMSILSTAGSGKFSSDRTIAQYAKEIWNIEECR 840          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHSH_WHEAT (Alpha-glucan phosphorylase, H isozyme OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 265.774 bits (678), Expect = 1.618e-70
Identity = 123/148 (83.11%), Postives = 140/148 (94.59%), Query Frame = -2
Query:  257 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITEC 700
            NGC+IIGTLDGANVEIR+E+G++NFFLFGA A+QV  LRK+RE+GLFKPDPRFEEAKQFIRSGAFG+YDY PLLDSLEGNTG+GRGDYFLVGYDFPSY++AQ RVD+AYKD+KKW+KMSIL+TAGSGKFSSDRTI QYAKEIW I+ C
Sbjct:  682 NGCVIIGTLDGANVEIREEVGQDNFFLFGAKADQVAGLRKDRENGLFKPDPRFEEAKQFIRSGAFGTYDYTPLLDSLEGNTGFGRGDYFLVGYDFPSYIDAQARVDEAYKDKKKWVKMSILNTAGSGKFSSDRTIDQYAKEIWGISAC 829          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHSL2_SOLTU (Alpha-1,4 glucan phosphorylase L-2 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum GN=STP-1 PE=1 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.421e-58
Identity = 104/145 (71.72%), Postives = 123/145 (84.83%), Query Frame = -2
Query:  266 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 700
            NGCL+IGTLDGANVEIR+E+GE+NFFLFGA A ++  LRKER +G F PDPRFEE K FIR+G FG+Y+Y  L+ SLEGN GYGR DYFLVG DFP Y+E QD+VD+AY+D+KKW KMSIL+TAGS KFSSDRTI QYA++IW I
Sbjct:  824 NGCLLIGTLDGANVEIREEVGEDNFFLFGAQAHEIAGLRKERAEGKFVPDPRFEEVKAFIRTGVFGTYNYEELMGSLEGNEGYGRADYFLVGKDFPDYIECQDKVDEAYRDQKKWTKMSILNTAGSFKFSSDRTIHQYARDIWRI 968          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHSL1_SOLTU (Alpha-1,4 glucan phosphorylase L-1 isozyme, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 2.424e-58
Identity = 104/145 (71.72%), Postives = 125/145 (86.21%), Query Frame = -2
Query:  266 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 700
            NGC+ IGTLDGANVEIR+E+GEENFFLFGA A ++  LRKER DG F PD RFEE K+F+RSGAFGSY+Y+ L+ SLEGN G+GR DYFLVG DFPSY+E Q++VD+AY+D+K+W  MSIL+TAGS KFSSDRTI +YAK+IWNI
Sbjct:  816 NGCIQIGTLDGANVEIREEVGEENFFLFGAQAHEIAGLRKERADGKFVPDERFEEVKEFVRSGAFGSYNYDDLIGSLEGNEGFGRADYFLVGKDFPSYIECQEKVDEAYRDQKRWTTMSILNTAGSYKFSSDRTIHEYAKDIWNI 960          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHSL_VICFA (Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Vicia faba GN=PHO1 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.051e-58
Identity = 104/145 (71.72%), Postives = 123/145 (84.83%), Query Frame = -2
Query:  266 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 700
            NGCL IGTLDGANVEIR+E+G +NFFLFGA A ++  LRKER  G F PDPRFEE K+F+RSG FGSY+Y+ L+ SLEGN G+GR DYFLVG DFPSYLE Q+ VD+AY+D+KKW +MSIL+TAGS KFSSDRTI +YA+EIWNI
Sbjct:  853 NGCLQIGTLDGANVEIREEVGADNFFLFGAKAREIVGLRKERARGKFVPDPRFEEVKKFVRSGVFGSYNYDELIGSLEGNEGFGRADYFLVGQDFPSYLECQEEVDKAYRDQKKWTRMSILNTAGSSKFSSDRTIHEYAREIWNI 997          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHSL_IPOBA (Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Ipomoea batatas PE=2 SV=1)

HSP 1 Score: 220.705 bits (561), Expect = 5.969e-57
Identity = 103/145 (71.03%), Postives = 123/145 (84.83%), Query Frame = -2
Query:  266 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYDYNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNI 700
            NGC++IGTLDGANVEIRQE+GEENFFLFGA A ++  LRKER +G F PD RFEE K+FI+ G FGS  Y+ LL SLEGN G+GRGDYFLVG DFPSY+E Q++VD+AY+D+K W +MSIL+TAGS KFSSDRTI +YAK+IWNI
Sbjct:  805 NGCILIGTLDGANVEIRQEVGEENFFLFGAEAHEIAGLRKERAEGKFVPDERFEEVKEFIKRGVFGSNTYDELLGSLEGNEGFGRGDYFLVGKDFPSYIECQEKVDEAYRDQKIWTRMSILNTAGSYKFSSDRTIHEYAKDIWNI 949          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHS2_DICDI (Glycogen phosphorylase 2 OS=Dictyostelium discoideum GN=glpD PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.582e-33
Identity = 70/148 (47.30%), Postives = 100/148 (67.57%), Query Frame = -2
Query:  260 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYD-YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITE 700
            NG LIIGTLDGAN+EIR  IG EN ++FGA +E+V K++K   DG F PD R+      I+   FG ++ +  +++S+ G       D++++ YDF SYL+ Q+ +DQ +KDR KW K SI+++   GKFSSDRTI +YA++IW I E
Sbjct:  767 NGGLIIGTLDGANIEIRDAIGHENMYIFGARSEEVNKVKKIIHDGKFTPDTRWARVLTAIKEDTFGPHEQFQDIINSVSGGN-----DHYILSYDFGSYLDIQNSIDQDFKDRAKWAKKSIMASVCCGKFSSDRTIKEYAQQIWGIEE 909          
BLAST of CN189704 vs. ExPASy Swiss-Prot
Match: PHS1_DICDI (Glycogen phosphorylase 1 OS=Dictyostelium discoideum GN=glpV PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 66/149 (44.30%), Postives = 95/149 (63.76%), Query Frame = -2
Query:  257 NGCLIIGTLDGANVEIRQEIGEENFFLFGAVAEQVPKLRKEREDGLFKPDPRFEEAKQFIRSGAFGSYD-YNPLLDSLEGNTGYGRGDYFLVGYDFPSYLEAQDRVDQAYKDRKKWLKMSILSTAGSGKFSSDRTIAQYAKEIWNITEC 700
            NG LIIGTLDGANVEI +E+G+EN F+FG    +V   R++  +     DPR +E    I  G FG  D + P+LDSL  +      D++L   DFP YL++Q  VD+ +KD+  W+K SI+++A +  FSSDR + +YA++IW+I  C
Sbjct:  701 NGSLIIGTLDGANVEIAEEVGQENMFIFGLRTSEVEAAREKMTNKEVNIDPRLQEVFLNIELGTFGPPDVFRPILDSLIFS------DFYLSIQDFPLYLDSQASVDELWKDQSAWVKKSIINSASTYFFSSDRAMNEYAEQIWDIKPC 843          
The following BLAST results are available for this feature:
BLAST of CN189704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
PHSH_ARATH1.414e-7487.84Alpha-glucan phosphorylase, H isozyme OS=Arabidops... [more]
PHSH_SOLTU1.847e-7485.91Alpha-glucan phosphorylase, H isozyme OS=Solanum t... [more]
PHSH_VICFA7.019e-7486.58Alpha-glucan phosphorylase, H isozyme OS=Vicia fab... [more]
PHSH_WHEAT1.618e-7083.11Alpha-glucan phosphorylase, H isozyme OS=Triticum ... [more]
PHSL2_SOLTU1.421e-5871.72Alpha-1,4 glucan phosphorylase L-2 isozyme, chloro... [more]
PHSL1_SOLTU2.424e-5871.72Alpha-1,4 glucan phosphorylase L-1 isozyme, chloro... [more]
PHSL_VICFA7.051e-5871.72Alpha-1,4 glucan phosphorylase L isozyme, chloropl... [more]
PHSL_IPOBA5.969e-5771.03Alpha-1,4 glucan phosphorylase L isozyme, chloropl... [more]
PHS2_DICDI1.582e-3347.30Glycogen phosphorylase 2 OS=Dictyostelium discoide... [more]
PHS1_DICDI4.458e-2844.30Glycogen phosphorylase 1 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E17_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189704 ID=CN189704; Name=CN189704; organism=Citrus sinensis; type=EST; length=701bp
TTTTTTTTTTTTTTTTTCTTCAAACCTGGAAATTCTTATAAAGATACATT
TGTTTAAGAAATTACAACTTAAAACTTATCTGACAGATTGATGTTTGAGT
AATCAAATGATGGTTAAGACGGAGAGACAAGTTTAGTTAATGATCCCCAC
AGATTGTGGATTTCCTTTCATTTTCTTCCCATCTTAATACATCCTTCCAA
GAAATTATATAACCTATTGCACATGAAATTTTTTTGCACTTGAATCATGC
TGTACGGCATTCTGTTATGTTCCAGATTTCCTTAGCATACTGTGCAATTG
TGCGATCACTGCTGAATTTCCCACTGCCAGCTGTACTTAATATAGACATC
TTCAGCCACTTCTTCCGGTCCTTGTAAGCTTGGTCAACTCTGTCCTGAGC
CTCTAAGTAACTTGGGAAGTCATAACCAACTAGAAAATAATCACCACGAC
CATAACCAGTGTTCCCCTCCAGGGAATCAAGAAGCGGGTTGTAGTCATAG
CTTCCAAATGCTCCACTTCTTATAAATTGCTTGGCCTCTTCAAACCGAGG
ATCTGGTTTGAACAATCCATCTTCTCTTTCCTTACGCAGCTTAGGGACTT
GTTCTGCTACTGCACCAAAGAGAAAGAAATTCTCCTCTCCTATCTCCTGC
CTGATTTCCACATTAGCTCCATCCAATGTTCCTATAATGAGGCAACCATT
T
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