DR908841

Overview
NameDR908841
Unique NameDR908841
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.227e-31
Identity = 68/103 (66.02%), Postives = 77/103 (74.76%), Query Frame = 2
Query:    8 GSIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFTVNGFFF 316
            GSIY ATKGA+N LAR LACEWA D IR N+V P  + TPL E+  +DE F K V  R P+ R G+P E+SSLVAFLCMPAASYITGQTI  DGG TVNGF +
Sbjct:  161 GSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDE-FKKVVISRKPLGRFGEPEEVSSLVAFLCMPAASYITGQTICVDGGLTVNGFSY 262          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: TRNH_DATST (Tropinone reductase homolog OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.304e-28
Identity = 57/103 (55.34%), Postives = 76/103 (73.79%), Query Frame = 2
Query:   11 SIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVE---GRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFTVNGF 310
            SIY A+KGA+N + + LACEWA+D+IR N+V PW + TP+ E+     +  K +E   GR PM+R G+P+E+SSLV +LC+P ASYITGQ I  DGG+TVNGF
Sbjct:  165 SIYAASKGAINQVTKSLACEWAKDSIRVNAVAPWIINTPIIEAACQVPSQKKNIESLIGRAPMKRAGEPSEVSSLVTYLCLPTASYITGQIICVDGGYTVNGF 267          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: TRN1_DATST (Tropinone reductase 1 OS=Datura stramonium GN=TR1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.345e-27
Identity = 60/105 (57.14%), Postives = 73/105 (69.52%), Query Frame = 2
Query:   11 SIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEG----RTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFTVNGFF 313
            S+Y A+KGA+N + + LACEWA+DNIR NSV P  + TPL E+ +      KE       +TPM R GKP E+S+L+AFLC PAASYITGQ I ADGGFT NG F
Sbjct:  169 SLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAIKKNPHQKEEIDNFIVKTPMGRAGKPQEVSALIAFLCFPAASYITGQIIWADGGFTANGGF 273          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: TRN2_HYONI (Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.493e-23
Identity = 53/104 (50.96%), Postives = 70/104 (67.31%), Query Frame = 2
Query:   11 SIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLND---EAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFTVNGFF 313
            ++YGATKGAM+ L R LA EWA+DNIR N V P  + T + E  + D   +  L ++  R  +RR G+P E++++VAFLC PAASY+TGQ I  DGGF  NG F
Sbjct:  157 AVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSMVEMTIQDPEQKENLDKLIDRCALRRMGEPKELAAVVAFLCFPAASYVTGQIIYVDGGFMANGGF 260          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.225e-21
Identity = 51/101 (50.50%), Postives = 67/101 (66.34%), Query Frame = 2
Query:   11 SIYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLND---EAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFTVN 304
            ++YGATKGAM+ L R LA EWA+DNIR N V P  + T L E  + D   +  L ++  R  +RR G+P E++++VAFLC PAASY+TGQ I  DGG   N
Sbjct:  157 AVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCFPAASYVTGQIIYVDGGLMAN 257          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.500e-15
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 2
Query:   17 YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTE-SFL-NDEAFLKEVEGR----TPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFT 298
            Y A+KG +  L R +A ++A+ NIR N V P  + TPL E SFL N+E  L+E++       P+ R GKP EI++++ FL    +SY+TG  I+ADGG+T
Sbjct:  152 YNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLASDLSSYMTGSAITADGGYT 251          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: ARDH_CANTR (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida tropicalis GN=ARD PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 38/96 (39.58%), Postives = 59/96 (61.46%), Query Frame = 2
Query:   14 IYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLK-EVEGRTPMRRTGKPNEISSLVAFLCM-PAASYITGQTISADGGF 295
            +Y  +K  + HLAR LACEWA+ NIR N+++P ++ TPLT + ++    +K E E + PM+R  +P E    + +L    A+SY TG  +  DGG+
Sbjct:  184 MYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKTEWESKIPMKRMAEPKEFVGSILYLASDSASSYTTGHNLVVDGGY 279          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: ARDH_CANAL (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Candida albicans GN=ARD1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.510e-14
Identity = 38/96 (39.58%), Postives = 60/96 (62.50%), Query Frame = 2
Query:   14 IYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLK-EVEGRTPMRRTGKPNE-ISSLVAFLCMPAASYITGQTISADGGF 295
            +Y  +K  + HLAR LACEWA+ NIR N+++P ++ TPLT + ++    +K E E + PM+R  +P E + S++      A+SY TG  +  DGG+
Sbjct:  183 MYNMSKAGVIHLARSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKTEWESKIPMKRMAEPKEFVGSILYLASESASSYTTGHNLVVDGGY 278          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 2
Query:   17 YGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEVEGRTPMRRTGKPNEISSLVAFLCMPAASYITGQTISADGGFT 298
            Y A+KG M  +   LA E+A   IR N++ P  + TP+      D     +VE   PM   GKP EI+S+ AFL    ASY+TG T+ ADGG T
Sbjct:  158 YAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVAAFLASSQASYVTGITLFADGGMT 251          
BLAST of DR908841 vs. ExPASy Swiss-Prot
Match: ARDH_PICST (D-arabinitol 2-dehydrogenase [ribulose-forming] OS=Pichia stipitis GN=ARDH PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.196e-14
Identity = 37/96 (38.54%), Postives = 59/96 (61.46%), Query Frame = 2
Query:   14 IYGATKGAMNHLARILACEWAQDNIRTNSVTPWFVPTPLTESFLNDEAFLKEV-EGRTPMRRTGKPNE-ISSLVAFLCMPAASYITGQTISADGGF 295
            +Y  +K  + HL R LACEWA+ NIR N+++P ++ TPLT + ++    +KE  E + PM+R  +P E + S++      A+SY TG  +  DGG+
Sbjct:  180 MYNMSKAGVIHLVRSLACEWAKYNIRVNTLSPGYILTPLTRNVISGHTEMKEAWESKIPMKRMAEPKEFVGSILYLASETASSYTTGHNLVVDGGY 275          
The following BLAST results are available for this feature:
BLAST of DR908841 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
TRNH1_ARATH2.227e-3166.02Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
TRNH_DATST2.304e-2855.34Tropinone reductase homolog OS=Datura stramonium P... [more]
TRN1_DATST4.345e-2757.14Tropinone reductase 1 OS=Datura stramonium GN=TR1 ... [more]
TRN2_HYONI6.493e-2350.96Tropinone reductase 2 OS=Hyoscyamus niger GN=TR2 P... [more]
TRN2_DATST1.225e-2150.50Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
BACC2_BACSU8.500e-1544.00Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
ARDH_CANTR5.510e-1439.58D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
ARDH_CANAL5.510e-1439.58D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]
DHG2_BACME7.196e-1442.55Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]
ARDH_PICST7.196e-1438.54D-arabinitol 2-dehydrogenase [ribulose-forming] OS... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16969 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_D03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908841 ID=DR908841; Name=DR908841; organism=Citrus sinensis; type=EST; length=573bp
TGACGCTGGATCCATATATGGAGCTACGAAAGGAGCCATGAACCATCTTG
CGAGGATTTTGGCATGCGAGTGGGCTCAAGACAATATTAGGACCAATTCT
GTCACACCTTGGTTCGTCCCGACTCCTTTAACTGAATCTTTTCTGAATGA
TGAGGCATTTTTAAAGGAAGTCGAGGGTCGAACTCCAATGAGACGCACAG
GGAAGCCAAATGAGATATCTTCATTGGTAGCATTTTTATGCATGCCTGCA
GCCTCTTATATAACTGGTCAGACAATTTCCGCTGACGGAGGATTTACAGT
GAATGGATTCTTCTTCCCAAGTACCTGATTTATTTTGTCCACTTCTCTGA
AATCTTCGAATCTGATAACTTAGTGTTGTGATTTCTCCGGCCCTAATAAA
CCGCCAGCATGTATCTCTTTTGATTTTTGACTCATCTTGTGGATTGTCTT
TTATTTCCCTTTTATCGAGTGTCGTCGCTTTATTCCATTTTATTTCCCTT
CTATCAAGTGTTGTCGCTTTATTCCGTTAAAATCACGATTTGAATTCGTA
CTGAATCTTAAATAAAAAAAAAA
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