DR908840

Overview
NameDR908840
Unique NameDR908840
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.216e-45
Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = 3
Query:   30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572
            +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR HRYIF +++  G                        +QE GPRFTLKL SL
Sbjct:  162 QLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKLRSL 319          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 1.216e-45
Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = 3
Query:   30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572
            +L +VIPNSH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT HIPE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR HRYIF +++  G                        +QE GPRFTLKL SL
Sbjct:  162 QLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKLRSL 319          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.621e-45
Identity = 91/182 (50.00%), Postives = 122/182 (67.03%), Query Frame = 3
Query:   30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572
            +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR HRYIF++++  G                        +QE GPRFTLKL SL
Sbjct:  162 QLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKLRSL 319          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.621e-45
Identity = 91/182 (50.00%), Postives = 122/182 (67.03%), Query Frame = 3
Query:   30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572
            +L +VIP+SH Y R    LKKII     +DFT +IV++ +R+ P+ L++  LP+GPTAHFK+S + LRK+IK  G +PT H+PE++LNNF TRLGH +GR+  SLFP +P+F GR+V TFHNQRD+IFFR HRYIF++++  G                        +QE GPRFTLKL SL
Sbjct:  162 QLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKLRSL 319          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.715e-44
Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 3
Query:    9 RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572
            R   F  +L S+IPNS  Y R    LKKII     +D+T ++V++ +R+ P+ L++  LPDGPTAHFK+S + LRK++K  G  PT H PE++LNNF TRLGH +GR+  SL+P  P F GR+V TFHNQRD+IFFR+HRY+F++++  G                        +QE GPRFTLKL SL
Sbjct:  149 RSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRYLFKSEKKVG------------------------IQELGPRFTLKLRSL 313          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 3.312e-43
Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 3
Query:   21 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 563
            F  EL   IPNS  + R    LK IIE AK+++FT ++VVH +R++P+ ++   LP+GPTA+FK++ L   +D+K  G  T H PE++LNNF TRLGH + R++  LFP  P+F GRRVVTFHNQRD+IFFRHHRY F+ + SK +                       L E GPRFTL+L
Sbjct:  194 FCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTLRL 351          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.649e-43
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 3
Query:   21 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572
            F  +L +VIP+++ Y R    LKK+I     + FT ++V++ +R+ P+ +++  LPDGPTAHFK+S + LRK++K  G NPT H PE++LNNF TRLGH +GRL  +LFP  P+F GR+V TFHNQRDFIFFR HRYIF+ ++  G                        +QE GPRFTLKL SL
Sbjct:  140 FCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVG------------------------IQELGPRFTLKLRSL 300          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 5.287e-41
Identity = 90/182 (49.45%), Postives = 118/182 (64.84%), Query Frame = 3
Query:   30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572
            EL  + PN+    R    +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS + L  DIK +H   T H PE++LNNF TRLG  VGR++ +LF   PEFRGRR VTFHNQRD+IFFRHHRY F  +        GK+ K               L+E GPRFTLKL SL
Sbjct:  205 ELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKE--------GKRVK---------------LRELGPRFTLKLRSL 363          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.302e-39
Identity = 84/185 (45.41%), Postives = 113/185 (61.08%), Query Frame = 3
Query:   21 FISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572
            F + L+ ++PN  + KR   Y LK+I +   K++FT I++++ ++++   L  I LP+GPT +FKLS  V  K I  HG PT HIPEL+LNNF TRLG  VGRL QS+ PQ+P+  GR+V+T HNQRD+IFFR HRY+F+  E  G                        LQE GP+FTLKL  L
Sbjct:  110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERVG------------------------LQELGPQFTLKLKRL 270          
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: YDS4_SCHPO (Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe GN=SPAC4F8.04 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.102e-38
Identity = 84/182 (46.15%), Postives = 117/182 (64.29%), Query Frame = 3
Query:   21 FISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 563
            F SELL   PN+ + KR G  ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS L   K+I NHG  TGHIPEL++NNF+TRLG  V R  QSLF Q+P+ +GR+VVT H QRDF+FFR HRY F  ++S   D  G                 T LQE GPRFT++L
Sbjct:  111 FASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFR-EKSNMPDGIG-----------------TGLQELGPRFTMRL 274          
The following BLAST results are available for this feature:
BLAST of DR908840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
RPF1_PONAB1.216e-4551.10Ribosome production factor 1 OS=Pongo abelii GN=BX... [more]
RPF1_HUMAN1.216e-4551.10Ribosome production factor 1 OS=Homo sapiens GN=BX... [more]
RPF1_RAT4.621e-4550.00Ribosome production factor 1 OS=Rattus norvegicus ... [more]
RPF1_MOUSE4.621e-4550.00Ribosome production factor 1 OS=Mus musculus GN=Bx... [more]
RPF1_XENLA8.715e-4447.09Ribosome production factor 1 OS=Xenopus laevis GN=... [more]
YUY1_CAEEL3.312e-4346.96Brix domain-containing protein F44G4.1 OS=Caenorha... [more]
RPF1_DANRE5.649e-4347.57Ribosome production factor 1 OS=Danio rerio GN=bxd... [more]
RPF1_DROME5.287e-4149.45Probable ribosome production factor 1 OS=Drosophil... [more]
RPF1_YEAST1.302e-3945.41Ribosome production factor 1 OS=Saccharomyces cere... [more]
YDS4_SCHPO1.102e-3846.15Brix domain-containing protein C4F8.04 OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16968 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-30_G09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908840 ID=DR908840; Name=DR908840; organism=Citrus sinensis; type=EST; length=573bp
ATTCCAGTAGAGGACCGGCCTTTATATCAGAGTTACTGTCTGTGATCCCA
AATTCTCACTATTACAAGAGAGGAACCTATGATTTGAAGAAGATTATAGA
ATATGCAAAGAAGAAGGACTTCACTTCTATAATAGTTGTTCACACCAATA
GGAGGGAACCAGATGCTCTACTAATCATTGGCCTGCCTGATGGACCTACT
GCCCATTTCAAGCTGTCAAAGCTTGTTTTACGCAAGGATATTAAGAATCA
TGGAAATCCTACCGGTCACATTCCGGAGCTAGTGTTGAATAACTTCGCAA
CACGCCTGGGTCATCGTGTTGGGAGATTGATACAGTCACTTTTCCCTCAA
AGTCCAGAATTCCGAGGTCGTCGAGTGGTGACTTTTCACAATCAACGAGA
TTTCATATTCTTCCGACATCATCGGTATATATTTGAAACCCAAGAAAGTA
AAGGGAGTGACGCAAATGGTAAGAAAGCGAAAGATGCGAAGAGTGAAAAG
ACTTCTCAACAGAAAGTAATCACTCGCCTTCAGGAGTGTGGTCCTCGATT
TACACTGAAGTTGGTCAGTCTGC
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