DR908840
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_PONAB (Ribosome production factor 1 OS=Pongo abelii GN=BXDC5 PE=2 SV=1) HSP 1 Score: 182.57 bits (462), Expect = 1.216e-45 Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = 3 Query: 30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572 +L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR HRYIF +++ G +QE GPRFTLKL SL Sbjct: 162 QLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKLRSL 319
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_HUMAN (Ribosome production factor 1 OS=Homo sapiens GN=BXDC5 PE=1 SV=2) HSP 1 Score: 182.57 bits (462), Expect = 1.216e-45 Identity = 93/182 (51.10%), Postives = 121/182 (66.48%), Query Frame = 3 Query: 30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572 +L +VIPNSH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT HIPE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR HRYIF +++ G +QE GPRFTLKL SL Sbjct: 162 QLSTVIPNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFRSEKKVG------------------------IQELGPRFTLKLRSL 319
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_RAT (Ribosome production factor 1 OS=Rattus norvegicus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 4.621e-45 Identity = 91/182 (50.00%), Postives = 122/182 (67.03%), Query Frame = 3 Query: 30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572 +L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR HRYIF++++ G +QE GPRFTLKL SL Sbjct: 162 QLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKLRSL 319
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_MOUSE (Ribosome production factor 1 OS=Mus musculus GN=Bxdc5 PE=2 SV=2) HSP 1 Score: 180.644 bits (457), Expect = 4.621e-45 Identity = 91/182 (50.00%), Postives = 122/182 (67.03%), Query Frame = 3 Query: 30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572 +L +VIP+SH Y R LKKII +DFT +IV++ +R+ P+ L++ LP+GPTAHFK+S + LRK+IK G +PT H+PE++LNNF TRLGH +GR+ SLFP +P+F GR+V TFHNQRD+IFFR HRYIF++++ G +QE GPRFTLKL SL Sbjct: 162 QLSTVIPDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVRLRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDYIFFRFHRYIFKSEKKVG------------------------IQELGPRFTLKLRSL 319
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_XENLA (Ribosome production factor 1 OS=Xenopus laevis GN=bxdc5 PE=2 SV=1) HSP 1 Score: 176.407 bits (446), Expect = 8.715e-44 Identity = 89/189 (47.09%), Postives = 120/189 (63.49%), Query Frame = 3 Query: 9 RGPAFISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGN-PTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572 R F +L S+IPNS Y R LKKII +D+T ++V++ +R+ P+ L++ LPDGPTAHFK+S + LRK++K G PT H PE++LNNF TRLGH +GR+ SL+P P F GR+V TFHNQRD+IFFR+HRY+F++++ G +QE GPRFTLKL SL Sbjct: 149 RSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKEMKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFRYHRYLFKSEKKVG------------------------IQELGPRFTLKLRSL 313
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: YUY1_CAEEL (Brix domain-containing protein F44G4.1 OS=Caenorhabditis elegans GN=F44G4.1 PE=2 SV=4) HSP 1 Score: 174.481 bits (441), Expect = 3.312e-43 Identity = 85/181 (46.96%), Postives = 114/181 (62.98%), Query Frame = 3 Query: 21 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 563 F EL IPNS + R LK IIE AK+++FT ++VVH +R++P+ ++ LP+GPTA+FK++ L +D+K G T H PE++LNNF TRLGH + R++ LFP P+F GRRVVTFHNQRD+IFFRHHRY F+ + SK + L E GPRFTL+L Sbjct: 194 FCFELQKCIPNSEIFTRKNVLLKTIIEQAKEREFTDLLVVHEDRKKPNGIIFCHLPEGPTAYFKINSLTFTQDLKKFGESTSHFPEVILNNFNTRLGHNIARMLACLFPHDPKFTGRRVVTFHNQRDYIFFRHHRYEFKKEGSKAA-----------------------LLELGPRFTLRL 351
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_DANRE (Ribosome production factor 1 OS=Danio rerio GN=bxdc5 PE=2 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 5.649e-43 Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 3 Query: 21 FISELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHG-NPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572 F +L +VIP+++ Y R LKK+I + FT ++V++ +R+ P+ +++ LPDGPTAHFK+S + LRK++K G NPT H PE++LNNF TRLGH +GRL +LFP P+F GR+V TFHNQRDFIFFR HRYIF+ ++ G +QE GPRFTLKL SL Sbjct: 140 FCDQLATVIPHAYVYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKEMKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFRFHRYIFKNEKKVG------------------------IQELGPRFTLKLRSL 300
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_DROME (Probable ribosome production factor 1 OS=Drosophila melanogaster GN=CG6712 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 5.287e-41 Identity = 90/182 (49.45%), Postives = 118/182 (64.84%), Query Frame = 3 Query: 30 ELLSVIPNSHYYKRGTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIK-NHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572 EL + PN+ R +KKI + A++++FT +++V+ +RR+P+ LL+I LP+GPTAHFKLS + L DIK +H T H PE++LNNF TRLG VGR++ +LF PEFRGRR VTFHNQRD+IFFRHHRY F + GK+ K L+E GPRFTLKL SL Sbjct: 205 ELSRIFPNALVKIRNKSSVKKICKSAEREEFTDVVIVNEDRRKPNGLLVIHLPNGPTAHFKLSNVKLTSDIKRDHKEITKHRPEVILNNFTTRLGLTVGRMLGALFHHDPEFRGRRAVTFHNQRDYIFFRHHRYEFTKE--------GKRVK---------------LRELGPRFTLKLRSL 363
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: RPF1_YEAST (Ribosome production factor 1 OS=Saccharomyces cerevisiae GN=RPF1 PE=1 SV=1) HSP 1 Score: 162.54 bits (410), Expect = 1.302e-39 Identity = 84/185 (45.41%), Postives = 113/185 (61.08%), Query Frame = 3 Query: 21 FISELLSVIPNSHYYKRGT-YDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKLVSL 572 F + L+ ++PN + KR Y LK+I + K++FT I++++ ++++ L I LP+GPT +FKLS V K I HG PT HIPEL+LNNF TRLG VGRL QS+ PQ+P+ GR+V+T HNQRD+IFFR HRY+F+ E G LQE GP+FTLKL L Sbjct: 110 FANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVIINEDKKKVTGLTFIHLPEGPTFYFKLSSFVEVKKIVGHGRPTSHIPELILNNFQTRLGQTVGRLFQSILPQNPDIEGRQVITLHNQRDYIFFRRHRYVFKDNERVG------------------------LQELGPQFTLKLKRL 270
BLAST of DR908840 vs. ExPASy Swiss-Prot
Match: YDS4_SCHPO (Brix domain-containing protein C4F8.04 OS=Schizosaccharomyces pombe GN=SPAC4F8.04 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.102e-38 Identity = 84/182 (46.15%), Postives = 117/182 (64.29%), Query Frame = 3 Query: 21 FISELLSVIPNSHYYKR-GTYDLKKIIEYAKKKDFTSIIVVHTNRREPDALLIIGLPDGPTAHFKLSKLVLRKDIKNHGNPTGHIPELVLNNFATRLGHRVGRLIQSLFPQSPEFRGRRVVTFHNQRDFIFFRHHRYIFETQESKGSDANGKKAKDAKSEKTSQQKVITRLQECGPRFTLKL 563 F SELL PN+ + KR G ++ +I E A K+ +T ++V++ +R++ +AL ++ LP+GP+ +F LS L K+I NHG TGHIPEL++NNF+TRLG V R QSLF Q+P+ +GR+VVT H QRDF+FFR HRY F ++S D G T LQE GPRFT++L Sbjct: 111 FASELLDCFPNAEFRKRTGDIEVHEIAEAAAKRGYTDLLVLNEDRKKTNALTLVHLPNGPSFYFTLSNLQTAKEISNHGRSTGHIPELIINNFSTRLGMTVARAFQSLFIQTPQIQGRQVVTIHCQRDFLFFRRHRYAFR-EKSNMPDGIG-----------------TGLQELGPRFTMRL 274 The following BLAST results are available for this feature:
BLAST of DR908840 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >DR908840 ID=DR908840; Name=DR908840; organism=Citrus sinensis; type=EST; length=573bpback to top |