DR908839
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15 Identity = 49/132 (37.12%), Postives = 84/132 (63.64%), Query Frame = 2 Query: 38 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427 G+ +AVT +ENIG+G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +P D + + P + S+ + KI+KD VR+ +IGT+ ++A F + +++ DFLG ++ Sbjct: 43 GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14 Identity = 47/132 (35.61%), Postives = 84/132 (63.64%), Query Frame = 2 Query: 38 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQA-ENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427 G+ +A+T ++ IG+G +R+ TG V FPV + + F+ F+GE+L+ V V K G F + GPV+ I+++ +PD QA + P + S+ + KI+K+ VR+ +IGT+ ++A F + +++ DFLG ++ Sbjct: 43 GFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13 Identity = 47/132 (35.61%), Postives = 81/132 (61.36%), Query Frame = 2 Query: 38 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN--PVFLSEK-NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 424 G+ + +T+++ + +G+V E++G V+F V + I FK F+GEVLD V KV G F + GP+ +I+++ +P A++ P F+SE + KI KD VR+ + GT+ ++A F A+ S+ D+LG + Sbjct: 43 GFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPL-SIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTR-VDATEIF-AIGSIREDYLGVI 171
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13 Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2 Query: 26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427 T G+ +AVTT++NIG G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12 Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2 Query: 26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427 T G+ +AVTT++NIG G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12 Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2 Query: 26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427 T G+ +AVTT++NIG G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12 Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2 Query: 26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427 T G+ +AVTT++NIG G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12 Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2 Query: 26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427 T G+ +AVTT++NIG G ++ G VL+PV + I F+ F+GEV+D V +V K G+F + GP+ S + + NP +++ I++D +R+ ++GT+ + + A+ SL D+LG VS Sbjct: 39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172 The following BLAST results are available for this feature:
BLAST of DR908839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DR908839 ID=DR908839; Name=DR908839; organism=Citrus sinensis; type=EST; length=573bpback to top |