DR908839

Overview
NameDR908839
Unique NameDR908839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 49/132 (37.12%), Postives = 84/132 (63.64%), Query Frame = 2
Query:   38 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMP-DYRYVQAENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427
            G+ +AVT +ENIG+G +R+ TG V FPV +  + F+ F+GE+L+  V  V K G F + GPV+ I+++   +P D  +   + P +  S+ + KI+KD  VR+ +IGT+ ++A   F  + +++ DFLG ++
Sbjct:   43 GFVVAVTGIENIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ-IFVSNHLIPDDMEFQSGDMPNYTTSDGSVKIQKDSEVRLKIIGTR-VDATEIF-CIGTIKDDFLGVIN 171          
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_ARATH (DNA-directed RNA polymerase II subunit RPB7 OS=Arabidopsis thaliana GN=RPB19 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.398e-14
Identity = 47/132 (35.61%), Postives = 84/132 (63.64%), Query Frame = 2
Query:   38 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQA-ENPVF-LSEKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427
            G+ +A+T ++ IG+G +R+ TG V FPV +  + F+ F+GE+L+  V  V K G F + GPV+ I+++   +PD    QA + P +  S+ + KI+K+  VR+ +IGT+ ++A   F  + +++ DFLG ++
Sbjct:   43 GFVVAITGIDTIGKGLIRDGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQ-IFVSKHLIPDDMEFQAGDMPNYTTSDGSVKIQKECEVRLKIIGTR-VDATAIF-CVGTIKDDFLGVIN 171          
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_DICDI (DNA-directed RNA polymerase II subunit rpb7 OS=Dictyostelium discoideum GN=polr2g PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.092e-13
Identity = 47/132 (35.61%), Postives = 81/132 (61.36%), Query Frame = 2
Query:   38 GYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAEN--PVFLSEK-NPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPV 424
            G+ + +T+++ + +G+V E++G V+F V +  I FK F+GEVLD  V KV   G F + GP+ +I+++   +P      A++  P F+SE  + KI KD  VR+ + GT+ ++A   F A+ S+  D+LG +
Sbjct:   43 GFIITITSVDFLSKGKVLESSGYVVFNVKYKAIIFKPFKGEVLDAIVTKVTNLGFFAEAGPL-SIFVSTQLIPSDMIFDAQSAVPCFVSEDGSSKISKDDEVRLQIKGTR-VDATEIF-AIGSIREDYLGVI 171          
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.956e-13
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427
            T   G+ +AVTT++NIG G ++   G VL+PV +  I F+ F+GEV+D  V +V K G+F + GP+       S   +  +    NP      +++  I++D  +R+ ++GT+    + +  A+ SL  D+LG VS
Sbjct:   39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTVDEDVVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172          
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_RAT (DNA-directed RNA polymerase II subunit RPB7 OS=Rattus norvegicus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427
            T   G+ +AVTT++NIG G ++   G VL+PV +  I F+ F+GEV+D  V +V K G+F + GP+       S   +  +    NP      +++  I++D  +R+ ++GT+    + +  A+ SL  D+LG VS
Sbjct:   39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172          
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_MOUSE (DNA-directed RNA polymerase II subunit RPB7 OS=Mus musculus GN=Polr2g PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427
            T   G+ +AVTT++NIG G ++   G VL+PV +  I F+ F+GEV+D  V +V K G+F + GP+       S   +  +    NP      +++  I++D  +R+ ++GT+    + +  A+ SL  D+LG VS
Sbjct:   39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172          
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427
            T   G+ +AVTT++NIG G ++   G VL+PV +  I F+ F+GEV+D  V +V K G+F + GP+       S   +  +    NP      +++  I++D  +R+ ++GT+    + +  A+ SL  D+LG VS
Sbjct:   39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172          
BLAST of DR908839 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.039e-12
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 2
Query:   26 TKDLGYFLAVTTLENIGEGRVRENTGEVLFPVVFSGITFKIFRGEVLDGTVHKVLKHGVFLKCGPVENIYLTCSKMPDYRYVQAENPVFLS--EKNPKIEKDVVVRVIVIGTKWLEAEREFQALVSLEGDFLGPVS 427
            T   G+ +AVTT++NIG G ++   G VL+PV +  I F+ F+GEV+D  V +V K G+F + GP+       S   +  +    NP      +++  I++D  +R+ ++GT+    + +  A+ SL  D+LG VS
Sbjct:   39 TGKYGFVIAVTTIDNIGAGVIQPGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTR--VDKNDIFAIGSLMDDYLGLVS 172          
The following BLAST results are available for this feature:
BLAST of DR908839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RPB7_SOYBN2.237e-1537.12DNA-directed RNA polymerase II subunit RPB7 OS=Gly... [more]
RPB7_ARATH9.398e-1435.61DNA-directed RNA polymerase II subunit RPB7 OS=Ara... [more]
RPB7_DICDI6.092e-1335.61DNA-directed RNA polymerase II subunit rpb7 OS=Dic... [more]
RPB7_DANRE7.956e-1333.09DNA-directed RNA polymerase II subunit RPB7 OS=Dan... [more]
RPB7_RAT1.039e-1233.09DNA-directed RNA polymerase II subunit RPB7 OS=Rat... [more]
RPB7_MOUSE1.039e-1233.09DNA-directed RNA polymerase II subunit RPB7 OS=Mus... [more]
RPB7_HUMAN1.039e-1233.09DNA-directed RNA polymerase II subunit RPB7 OS=Hom... [more]
RPB7_BOVIN1.039e-1233.09DNA-directed RNA polymerase II subunit RPB7 OS=Bos... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16967 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-29_D11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908839 ID=DR908839; Name=DR908839; organism=Citrus sinensis; type=EST; length=573bp
GGATGACTTTGCTCGCAGAAAGGCCACCAAAGATCTTGGATACTTTCTTG
CTGTCACAACTCTGGAGAACATAGGGGAGGGAAGAGTTAGAGAGAACACA
GGGGAGGTTCTCTTTCCTGTTGTTTTCAGTGGTATCACCTTCAAAATTTT
CAGGGGGGAGGTCTTGGATGGGACTGTGCACAAGGTGCTCAAGCATGGTG
TTTTCTTGAAGTGCGGGCCAGTCGAGAACATATACCTTACTTGTTCGAAA
ATGCCTGATTACCGTTATGTGCAGGCAGAGAATCCAGTCTTCCTGAGTGA
GAAGAACCCAAAAATTGAGAAAGATGTCGTAGTTCGTGTAATTGTGATTG
GAACCAAGTGGCTTGAGGCAGAAAGGGAATTCCAGGCACTGGTCAGCTTA
GAGGGTGATTTTCTAGGACCGGTTTCTTGTGAAAATCCTCTAGATTAAAC
TCATGTTTTGTAATGCATGTTTATATGACCCTGTTGTAGATGGAATTATT
GATAAATGCCAAGTACCATCAGATGTAACAAATGTTGGTTGATGAATGTC
TATACCTTTATGCAAAAAAAAAA
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