CN189699

Overview
NameCN189699
Unique NameCN189699
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189699 vs. ExPASy Swiss-Prot
Match: CAP2_ARATH (Putative clathrin assembly protein At2g25430 OS=Arabidopsis thaliana GN=At2g25430 PE=1 SV=2)

HSP 1 Score: 184.882 bits (468), Expect = 3.630e-46
Identity = 101/165 (61.21%), Postives = 114/165 (69.09%), Query Frame = -3
Query:  254 GRADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPSYVQMAEMERKXXXXXXXXXXXXQYGRDGMQGQVALAKIAGG-----------------SGYYGPNP 697
            G+ADWE ALVET  NL KQ AA  GGFD+L+LNGMYDQG VRQHVST+QL+GGSASSV LP PGK+   VLALPAPDGTV+ V N DPFAASLT+PPPSYVQMAEME+K            QY RDGM+GQ +LAK+  G                 +GYY  NP
Sbjct:  489 GKADWELALVETTSNLEKQTAALGGGFDNLLLNGMYDQGMVRQHVSTSQLTGGSASSVALPLPGKTNNQVLALPAPDGTVEKV-NQDPFAASLTIPPPSYVQMAEMEKKQYLLSQEQQLWQQYQRDGMRGQASLAKMNTGPVPAYGMPPVNGMGPPPTGYYYNNP 652          
BLAST of CN189699 vs. ExPASy Swiss-Prot
Match: CAP1_ARATH (Probable clathrin assembly protein At4g32285 OS=Arabidopsis thaliana GN=At4g32285 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.437e-44
Identity = 95/154 (61.69%), Postives = 112/154 (72.73%), Query Frame = -3
Query:  236 GRADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQTVGNNDPFAASLTVPPPSYVQMAEMERKXXXXXXXXXXXXQYGRDGMQGQVALAKIAGGSGYYGPNPQSMMPY 697
            G+ADWE ALVETA NL  QKAA  GG D L+LNGMYDQGAVRQHVST++L+GGS+SSV LP PGK  + +LALPAPDGTVQ V N DPFAASLT+PPPSYVQMAEM++K            QY ++GM+GQ +LAK+           Q+ MPY
Sbjct:  470 GKADWELALVETASNLEHQKAAMGGGLDPLLLNGMYDQGAVRQHVSTSELTGGSSSSVALPLPGKVNSHILALPAPDGTVQKV-NQDPFAASLTIPPPSYVQMAEMDKKQYLLTQEQQLWQQYQQEGMRGQASLAKM--------NTAQTAMPY 614          
BLAST of CN189699 vs. ExPASy Swiss-Prot
Match: CAP4_ARATH (Putative clathrin assembly protein At1g03050 OS=Arabidopsis thaliana GN=At1g03050 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26
Identity = 70/140 (50.00%), Postives = 82/140 (58.57%), Query Frame = -3
Query:  296 ADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHVSTTQLSG--GSASSVTLPGPGKSATPVLALPAPDGTVQTVGN------NDPFAASLTVPPPSYVQMAEMERKXXXXXXXXXXXXQYGRDGMQGQVAL 691
            ADWE+ALV+TA NLS QK+   GGFD L+LNGMY  GAV   V T+   G  GSASS+     G+ A  +LALPAP       GN       DPFAASL V PP+YVQM +ME+K            QY RDG QG + L
Sbjct:  446 ADWETALVQTATNLSGQKSELGGGFDMLLLNGMYQHGAVNAAVKTSTAYGASGSASSMAFGSAGRPAATMLALPAPSTANGNAGNINSPVPMDPFAASLEVAPPAYVQMNDMEKKQRMLMEEQMMWDQYSRDGRQGHMNL 585          
BLAST of CN189699 vs. ExPASy Swiss-Prot
Match: CAP3_ARATH (Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana GN=At4g02650 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.700e-24
Identity = 72/158 (45.57%), Postives = 85/158 (53.80%), Query Frame = -3
Query:  236 ADWESALVETAGNLSKQKAAYAGGFDSLVLNGMYDQGAVRQHV--STTQLSGGSASSVTLPGPGKSATPVLALPAPDGTVQTVGNN----DPFAASLTVPPPSYVQMAEMERKXXXXXXXXXXXXQYGRDGMQGQVALAKIAGGSGYYGPNPQSMMPY 691
            ADWE+ LV +A  LS QK+   GGFD+L+L+GMY  GAV   V  ST   S GSASSV     G  A  +LALPAP  T     N+    DPFAASL V PP+YVQM +ME+K            QY R G QG +   +       Y   P SM PY
Sbjct:  450 ADWETDLVRSATRLSGQKSELGGGFDTLLLDGMYQYGAVNAAVKTSTAYGSSGSASSVAFGSAGSPAASMLALPAPPPTANGNRNSPVMVDPFAASLEVAPPAYVQMNDMEKKQRLLMEEQIMWDQYNRSGRQGHMNFGQ--NQQQQYYQLPYSMGPY 605          
The following BLAST results are available for this feature:
BLAST of CN189699 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
CAP2_ARATH3.630e-4661.21Putative clathrin assembly protein At2g25430 OS=Ar... [more]
CAP1_ARATH4.437e-4461.69Probable clathrin assembly protein At4g32285 OS=Ar... [more]
CAP4_ARATH3.195e-2650.00Putative clathrin assembly protein At1g03050 OS=Ar... [more]
CAP3_ARATH8.700e-2445.57Putative clathrin assembly protein At4g02650 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E14_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189699 ID=CN189699; Name=CN189699; organism=Citrus sinensis; type=EST; length=702bp
GAGGAATAGACGCTCATCATATACTGTATTTCTGTCCTTACCCTGCATGG
TTGAACTGCATGCTATACATGTAAAAAGAAAATGCAAGAACAAAAACATT
ACAAGATAAAGAAAATCTTCCAAAAGGGAAGGAATGTACTAACGTGCATC
ATATGAAGCACCACCCCTTTCAATACGGTGAGTAGTAATATCCTCCAGGT
CCGGGCTGCCCCATGCCAGTGACCTGCGGCATCCCGTAAGGCATCATTGA
TTGAGGGTTAGGCCCGTAGTAACCAGAGCCACCAGCAATCTTGGCCAGTG
CCACCTGGCCTTGCATCCCATCCCTTCCATACTGCTGCCAAAGCTGCTGT
TCCTGCACAAGAAACTGCTGCTTCCTCTCCATTTCTGCCATCTGCACGTA
CGAAGGAGGTGGCACAGTAAGCGATGCAGCAAATGGGTCATTATTCCCCA
CCGTCTGGACCGTCCCATCTGGTGCTGGGAGTGCTAGCACTGGCGTAGCA
CTTTTGCCAGGCCCGGGTAATGTCACACTGCTTGCACTCCCACCACTCAG
TTGAGTGGTGCTGACATGCTGCCTTACTGCTCCTTGATCATACATGCCAT
TTAACACCAACGAATCAAAACCACCCGCATATGCAGCTTTCTGCTTTGAT
AGATTACCGGCTGTTTCCACTAAAGCTGATTCCCAATCTGCCCTACCACT
TT
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