DR908833

Overview
NameDR908833
Unique NameDR908833
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length573
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH11_ARATH (DEAD-box ATP-dependent RNA helicase 11 OS=Arabidopsis thaliana GN=RH11 PE=2 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.251e-54
Identity = 101/113 (89.38%), Postives = 109/113 (96.46%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT+IHGDRTQQERE+ALRSFK+G+TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSG+ATAFFNENN  LAR LAELMQE+NQEVP WLTRYASRA++
Sbjct:  435 ATSIHGDRTQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGIATAFFNENNAQLARSLAELMQEANQEVPEWLTRYASRASF 547          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH37_ARATH (DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis thaliana GN=RH37 PE=2 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.208e-53
Identity = 100/113 (88.50%), Postives = 110/113 (97.35%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT+IHGDRTQQERE+AL++FKSG+TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN+ N SLARPLAELMQE+NQEVP WLTRYASR+++
Sbjct:  445 ATSIHGDRTQQEREVALKAFKSGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNDGNTSLARPLAELMQEANQEVPEWLTRYASRSSF 557          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH52_ARATH (DEAD-box ATP-dependent RNA helicase 52 OS=Arabidopsis thaliana GN=RH52 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.061e-53
Identity = 99/113 (87.61%), Postives = 110/113 (97.35%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            ATTIHGDR+QQERE+ALRSFK+G+TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAG SGLATAFFN+NN ++A+PLAELMQE+NQEVP WLTRYASRA++
Sbjct:  432 ATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGNSGLATAFFNDNNTTMAKPLAELMQEANQEVPDWLTRYASRASF 544          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH52C_ORYSJ (DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa subsp. japonica GN=Os11g0599500 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.692e-53
Identity = 102/113 (90.27%), Postives = 107/113 (94.69%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT+IHGDR QQERE ALRSFKSG TPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENN S+AR LAELMQESNQEVPAWL+RYA+R +Y
Sbjct:  443 ATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQEVPAWLSRYAARPSY 555          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH37_ORYSJ (DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sativa subsp. japonica GN=PL10A PE=2 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.023e-52
Identity = 99/113 (87.61%), Postives = 107/113 (94.69%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT+IHGDRTQQERE ALRSFKSG TPILVATDVAARGLDIPHVAHV+NFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE NLSLARPL ELMQE+NQEVP WL RY++R+++
Sbjct:  460 ATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNEGNLSLARPLCELMQEANQEVPQWLERYSARSSF 572          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH52B_ORYSJ (DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa subsp. japonica GN=PL10B PE=2 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 3.887e-52
Identity = 98/113 (86.73%), Postives = 107/113 (94.69%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT+IHGDRTQQERE ALRSFKSG TPILVATDVAARGLDIPHVAHV+NFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNE+N  LARPL+ELMQE+NQEVP WL RYA+R+++
Sbjct:  455 ATSIHGDRTQQEREYALRSFKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNESNTPLARPLSELMQEANQEVPQWLERYAARSSF 567          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: RH52A_ORYSJ (DEAD-box ATP-dependent RNA helicase 52A OS=Oryza sativa subsp. japonica GN=Os06g0602400 PE=2 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 1.061e-41
Identity = 81/113 (71.68%), Postives = 96/113 (84.96%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT IHGDRTQQERE ALRSFK+G TPI+VATDVA+RGLD+P+VAHV+N+DLP  I+DYVHRIGRTGRAGK+G ATAFF E++ SLA+ L ELM E+ Q+VP WL +YA R  Y
Sbjct:  378 ATAIHGDRTQQERESALRSFKTGLTPIMVATDVASRGLDVPNVAHVINYDLPKSIEDYVHRIGRTGRAGKAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWLVQYAERPYY 490          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DED1_USTMA (ATP-dependent RNA helicase DED1 OS=Ustilago maydis GN=DED1 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 3.773e-39
Identity = 77/113 (68.14%), Postives = 92/113 (81.42%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT+IHGDRTQ+ERE AL  F+SGKTPI+VAT VAARGLDIP+V HVVN+DLP+D+DDYVHRIGRTGRAG  G ATAFFN  N ++ R L EL++E+NQEVP WL   A  + +
Sbjct:  477 ATSIHGDRTQRERERALELFRSGKTPIMVATAVAARGLDIPNVTHVVNYDLPSDVDDYVHRIGRTGRAGNVGHATAFFNRGNKNIVRDLIELLKEANQEVPQWLEAVARESMF 589          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DED1_GIBZE (ATP-dependent RNA helicase DED1 OS=Gibberella zeae GN=DED1 PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 8.406e-39
Identity = 74/113 (65.49%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT+IHGDRTQ+ERE AL  F++G+ PILVAT VAARGLDIPHV HV+N+DLP D+DDYVHRIGRTGRAG +G+ATAFFN  N  + R L +L++E+NQEVPA+L   A  +++
Sbjct:  472 ATSIHGDRTQRERERALEFFRNGRCPILVATAVAARGLDIPHVTHVINYDLPTDVDDYVHRIGRTGRAGNTGIATAFFNRGNRGIVRELMDLLKEANQEVPAFLETIARESSF 584          
BLAST of DR908833 vs. ExPASy Swiss-Prot
Match: DED1_NEUCR (ATP-dependent RNA helicase ded-1 OS=Neurospora crassa GN=ded-1 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.873e-38
Identity = 75/113 (66.37%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    1 ATTIHGDRTQQERELALRSFKSGKTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNLSLARPLAELMQESNQEVPAWLTRYASRANY 339
            AT+IHGDRTQ+ERE AL  F++G+ PILVAT VAARGLDIP+V HV+N+DLP DIDDYVHRIGRTGRAG +G+ATAFFN  N  + R L EL++E+NQEVPA+L   A  +++
Sbjct:  480 ATSIHGDRTQRERERALEMFRNGRCPILVATAVAARGLDIPNVTHVINYDLPTDIDDYVHRIGRTGRAGNTGIATAFFNRGNRGVVRELLELLKEANQEVPAFLETIARESSF 592          
The following BLAST results are available for this feature:
BLAST of DR908833 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH11_ARATH9.251e-5489.38DEAD-box ATP-dependent RNA helicase 11 OS=Arabidop... [more]
RH37_ARATH1.208e-5388.50DEAD-box ATP-dependent RNA helicase 37 OS=Arabidop... [more]
RH52_ARATH2.061e-5387.61DEAD-box ATP-dependent RNA helicase 52 OS=Arabidop... [more]
RH52C_ORYSJ2.692e-5390.27DEAD-box ATP-dependent RNA helicase 52C OS=Oryza s... [more]
RH37_ORYSJ1.023e-5287.61DEAD-box ATP-dependent RNA helicase 37 OS=Oryza sa... [more]
RH52B_ORYSJ3.887e-5286.73DEAD-box ATP-dependent RNA helicase 52B OS=Oryza s... [more]
RH52A_ORYSJ1.061e-4171.68DEAD-box ATP-dependent RNA helicase 52A OS=Oryza s... [more]
DED1_USTMA3.773e-3968.14ATP-dependent RNA helicase DED1 OS=Ustilago maydis... [more]
DED1_GIBZE8.406e-3965.49ATP-dependent RNA helicase DED1 OS=Gibberella zeae... [more]
DED1_NEUCR1.873e-3866.37ATP-dependent RNA helicase ded-1 OS=Neurospora cra... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16961 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-06_G12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908833 ID=DR908833; Name=DR908833; organism=Citrus sinensis; type=EST; length=573bp
GCAACTACTATTCATGGGGACAGAACACAACAGGAAAGGGAACTAGCATT
GAGATCATTTAAGAGTGGAAAGACACCAATTTTAGTAGCTACTGATGTGG
CGGCACGTGGTCTTGATATACCGCATGTGGCTCATGTAGTCAACTTTGAT
CTCCCTAATGACATTGATGATTATGTACATCGGATAGGAAGGACAGGACG
AGCTGGGAAATCAGGATTGGCTACAGCCTTTTTTAACGAGAACAATTTGT
CATTGGCAAGGCCTCTAGCTGAGCTAATGCAAGAATCTAATCAGGAAGTA
CCTGCTTGGCTTACTCGTTACGCATCACGGGCTAATTATGGCGGTGGCAA
AAATAAGCGATCTGGAGGAAACCGTTTTGGTGGTCGTGACTTCAGAAGAG
ATGGCTCATTTACTAGAGGCACATCTAATGACTTTTACAGTGGAGTGAAT
AGTAGTAGCAATGCATATGGGGTTCCAGGTGGTGGATATGGTGGGGGATA
TGGTTATAGCATCCTGGTGTGACCAGTGCATGGGATTAAGATCCCCACCT
TACACTGAAATGTCTTTACAACT
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