DR908831

Overview
NameDR908831
Unique NameDR908831
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908831 vs. ExPASy Swiss-Prot
Match: DHAR1_ARATH (Glutathione S-transferase DHAR1, mitochondrial OS=Arabidopsis thaliana GN=DHAR1 PE=1 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 9.251e-54
Identity = 100/138 (72.46%), Postives = 117/138 (84.78%), Query Frame = 1
Query:    1 VIVRIVEEKYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDPNDGTEQALLEELKALDEHLKTHGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKTKAEKQYVIAGWAPKVN 414
            VIV I+EEKYP+P L  P EFAS+GS IF +F  FLKSKD NDG+E ALL EL+AL+ HLK+H GPFIAGE+V+AVDLSLAPKLYHLQVAL HFK W+VPES  HVH YMK LF+L+SF+KTK E++YVI+GWAPKVN
Sbjct:   75 VIVGILEEKYPDPPLKTPAEFASVGSNIFGTFGTFLKSKDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSFEKTKTEEKYVISGWAPKVN 212          
BLAST of DR908831 vs. ExPASy Swiss-Prot
Match: CLIC1_HUMAN (Chloride intracellular channel protein 1 OS=Homo sapiens GN=CLIC1 PE=1 SV=4)

HSP 1 Score: 67.3958 bits (163), Expect = 5.678e-11
Identity = 41/132 (31.06%), Postives = 67/132 (50.76%), Query Frame = 1
Query:   25 KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 366
            +YP+ +  NP E  + G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:   92 RYPKLAALNP-ESNTAGLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGVSQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of DR908831 vs. ExPASy Swiss-Prot
Match: CLIC1_RAT (Chloride intracellular channel protein 1 OS=Rattus norvegicus GN=Clic1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 41/132 (31.06%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   25 KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 366
            +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:   92 RYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
BLAST of DR908831 vs. ExPASy Swiss-Prot
Match: CLIC1_MOUSE (Chloride intracellular channel protein 1 OS=Mus musculus GN=Clic1 PE=1 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 7.416e-11
Identity = 41/132 (31.06%), Postives = 66/132 (50.00%), Query Frame = 1
Query:   25 KYPEPSLTNPPEFASLGSKIFPSFVNFLKSKDP--NDGTEQALLEELKALDEHLKT----------------HGGPFIAGEKVTAVDLSLAPKLYHLQVALEHFKQWTVPESLAHVHGYMKKLFALESFQKT 366
            +YP+ +  NP    S G  IF  F  ++K+ +P  ND  E+ LL+ LK LD +L +                    F+ G ++T  D +L PKL+ +QV  + ++ +T+PE+   VH Y+   +A E F  T
Sbjct:   92 RYPKLAALNPESNTS-GLDIFAKFSAYIKNSNPALNDNLEKGLLKALKVLDNYLTSPLPEEVDETSAEDEGISQRKFLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFAST 222          
The following BLAST results are available for this feature:
BLAST of DR908831 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
DHAR1_ARATH9.251e-5472.46Glutathione S-transferase DHAR1, mitochondrial OS=... [more]
CLIC1_HUMAN5.678e-1131.06Chloride intracellular channel protein 1 OS=Homo s... [more]
CLIC1_RAT7.416e-1131.06Chloride intracellular channel protein 1 OS=Rattus... [more]
CLIC1_MOUSE7.416e-1131.06Chloride intracellular channel protein 1 OS=Mus mu... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16959 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_E10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908831 ID=DR908831; Name=DR908831; organism=Citrus sinensis; type=EST; length=574bp
GTGATTGTTAGAATTGTTGAGGAGAAGTATCCTGAGCCTTCTCTTACCAA
TCCTCCTGAATTTGCCTCTCTTGGATCAAAGATATTCCCATCTTTTGTCA
ATTTCTTGAAGAGCAAGGACCCAAATGATGGGACAGAGCAAGCTTTGCTG
GAGGAATTGAAAGCATTGGATGAGCATCTTAAGACCCATGGAGGTCCATT
CATTGCTGGAGAGAAGGTCACTGCTGTAGATTTGAGCTTGGCACCAAAGC
TGTACCACCTTCAGGTAGCTCTTGAACATTTCAAGCAGTGGACTGTCCCT
GAGAGCTTGGCTCATGTCCATGGGTACATGAAGAAGCTTTTTGCCCTGGA
ATCCTTTCAGAAGACTAAGGCTGAAAAGCAATACGTGATTGCAGGATGGG
CGCCGAAGGTCAATGCATGAACTAGTTCTAAGCTATGCGGTGTTTGAAAT
CTAGCTAATGAAATGCGAGTAATGTATGTGTGAGACTTGGAGCATAATTA
GAATGTTCACTGGGGGTTTGTATCATCCAATAAAGGTAGCTACAATGATA
TTTGCTATTTGTTATAAAAAAAAA
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