CN189680

Overview
NameCN189680
Unique NameCN189680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length347
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_RHOCS (50S ribosomal protein L33 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmG PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.995e-12
Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 3
Query:   51 KKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            K+  + ++LVS+A TGFFYVK+K+ +K  EKLEF+KYDP   +HV+F EAKMK
Sbjct:    3 KQNTVLIKLVSSADTGFFYVKKKNPRKTTEKLEFKKYDPVARKHVVFKEAKMK 55          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_EHRCJ (50S ribosomal protein L33 OS=Ehrlichia canis (strain Jake) GN=rpmG PE=3 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 5.108e-12
Identity = 31/54 (57.41%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   48 KKKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            KK + + V+L S+A TGFFYVK+++ KK++ KL FRKYDP V +HVLF+E K+K
Sbjct:    3 KKGSTLLVKLASSAKTGFFYVKKRNPKKLINKLSFRKYDPVVRKHVLFSEEKLK 56          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_RICBR (50S ribosomal protein L33 OS=Rickettsia bellii (strain RML369-C) GN=rpmG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.672e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 3
Query:   48 KKKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            KK   + VRLVS AGTGFF VK+++ K   EKL FRKYDP+V +HVLF E K+K
Sbjct:    3 KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_RICB8 (50S ribosomal protein L33 OS=Rickettsia bellii (strain OSU 85-389) GN=rpmG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.672e-12
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 3
Query:   48 KKKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            KK   + VRLVS AGTGFF VK+++ K   EKL FRKYDP+V +HVLF E K+K
Sbjct:    3 KKNKNILVRLVSTAGTGFFLVKKRNPKTQTEKLSFRKYDPKVRKHVLFKEEKIK 56          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_ORITI (50S ribosomal protein L33 OS=Orientia tsutsugamushi (strain Ikeda) GN=rpmG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.672e-12
Identity = 32/54 (59.26%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   48 KKKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            +KK  + V+LVS+AGTG F+VK+++ K   EKL FRKYDP+V +HV FTEAK+K
Sbjct:    3 RKKKKVLVKLVSSAGTGVFWVKQRNPKTQTEKLSFRKYDPKVRKHVQFTEAKIK 56          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_EHRRW (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Welgevonden) GN=rpmG PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.672e-12
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   48 KKKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            K+ + + V+L S+AGTG+FYVK+++ KK++ KL FRKYDP   +HVLFTE K++
Sbjct:    3 KRGSTLLVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEKLR 56          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_EHRRG (50S ribosomal protein L33 OS=Ehrlichia ruminantium (strain Gardel) GN=rpmG PE=3 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 6.672e-12
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 3
Query:   48 KKKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            K+ + + V+L S+AGTG+FYVK+++ KK++ KL FRKYDP   +HVLFTE K++
Sbjct:    3 KRGSTLLVKLASSAGTGYFYVKKRNPKKLINKLSFRKYDPVARKHVLFTEEKLR 56          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_MAGSA (50S ribosomal protein L33 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 31/53 (58.49%), Postives = 40/53 (75.47%), Query Frame = 3
Query:   51 KKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            K   + ++L+S AGTGFFYV +K+ +K  EKLEFRKYDP V +HV F EAK+K
Sbjct:    3 KPATILIKLLSTAGTGFFYVAKKNPRKTTEKLEFRKYDPVVRKHVQFKEAKIK 55          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_ANAMM (50S ribosomal protein L33 OS=Anaplasma marginale (strain St. Maries) GN=rpmG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   48 KKKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            KK + + V+LVS+ GTG+FYVK++  KK++EKL FRKYDP   +HVLF E K++
Sbjct:    3 KKGSGLLVKLVSSEGTGYFYVKKRDPKKLVEKLSFRKYDPVARKHVLFKEEKLR 56          
BLAST of CN189680 vs. ExPASy Swiss-Prot
Match: RL33_ANAMF (50S ribosomal protein L33 OS=Anaplasma marginale (strain Florida) GN=rpmG PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 3
Query:   48 KKKTFMFVRLVSAAGTGFFYVKRKSAKKVLEKLEFRKYDPRVNRHVLFTEAKMK 209
            KK + + V+LVS+ GTG+FYVK++  KK++EKL FRKYDP   +HVLF E K++
Sbjct:    3 KKGSGLLVKLVSSEGTGYFYVKKRDPKKLVEKLSFRKYDPVARKHVLFKEEKLR 56          
The following BLAST results are available for this feature:
BLAST of CN189680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RL33_RHOCS2.995e-1258.4950S ribosomal protein L33 OS=Rhodospirillum centen... [more]
RL33_EHRCJ5.108e-1257.4150S ribosomal protein L33 OS=Ehrlichia canis (stra... [more]
RL33_RICBR6.672e-1261.1150S ribosomal protein L33 OS=Rickettsia bellii (st... [more]
RL33_RICB86.672e-1261.1150S ribosomal protein L33 OS=Rickettsia bellii (st... [more]
RL33_ORITI6.672e-1259.2650S ribosomal protein L33 OS=Orientia tsutsugamush... [more]
RL33_EHRRW6.672e-1253.7050S ribosomal protein L33 OS=Ehrlichia ruminantium... [more]
RL33_EHRRG6.672e-1253.7050S ribosomal protein L33 OS=Ehrlichia ruminantium... [more]
RL33_MAGSA1.138e-1158.4950S ribosomal protein L33 OS=Magnetospirillum magn... [more]
RL33_ANAMM1.138e-1155.5650S ribosomal protein L33 OS=Anaplasma marginale (... [more]
RL33_ANAMF1.138e-1155.5650S ribosomal protein L33 OS=Anaplasma marginale (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002E02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189680 ID=CN189680; Name=CN189680; organism=Citrus sinensis; type=EST; length=347bp
TTTCAATCTTTTCTACTCGCCGCTGCCTATTCTAACTAATGGGGGACAAG
AAGAAGACTTTCATGTTTGTGCGGCTTGTCTCAGCTGCTGGGACTGGATT
TTTCTATGTCAAGAGGAAGAGTGCTAAGAAAGTCTTGGAGAAGCTCGAGT
TCCGAAAATATGACCCGCGAGTGAATCGCCATGTTCTATTTACAGAGGCG
AAAATGAAGTGACATACCTTGAGTGATTTTTTCTGTTCATCGACTCTTGA
CACTTGAATTAGTAGTATACTATTGCTGTTTTTGTGGACAATGCTTAACC
TAGTAGAGCTCAATAAATATTTCTTTTGTGGAAAAAAAAAAAAAAAA
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