CN189675

Overview
NameCN189675
Unique NameCN189675
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189675 vs. ExPASy Swiss-Prot
Match: TMED_NEMVE (Transmembrane emp24 domain-containing protein OS=Nematostella vectensis GN=v1g194562 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 49/174 (28.16%), Postives = 86/174 (49.43%), Query Frame = -3
Query:  218 EECFSHNVQYEGDTVHASFVVIKADSSWYSSHDGVDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 733
            EECF H+    G  +   F V  A+  +      +D+ + GP    I+    + S K+ F AH  G + +CF+NK  +   + + F + +G          +   + L E +S+L EA+  ++ EQ ++E +      +N+  + R V+ +F+ES  LV  ++ QVY L+R FE
Sbjct:   32 EECF-HDKVTSGTKMGLIFEV--AEGGFLD----IDVKIIGPDQKVIYSGERETSGKYTFAAHMDGTYNYCFSNKMSTMTPKVLKFSMDIGEAPKDTSKEDNAGHDKLSEMVSQLSEAMTGVKHEQEYMEVRERIHRSINDNTNSRVVWWSFFESLVLVAMTLGQVYYLKRFFE 198          
BLAST of CN189675 vs. ExPASy Swiss-Prot
Match: TMED2_RAT (Transmembrane emp24 domain-containing protein 2 OS=Rattus norvegicus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 39/140 (27.86%), Postives = 75/140 (53.57%), Query Frame = -3
Query:  218 VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 631
            +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  LV  ++ Q+Y L+R FE
Sbjct:   57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196          
BLAST of CN189675 vs. ExPASy Swiss-Prot
Match: TMED2_MOUSE (Transmembrane emp24 domain-containing protein 2 OS=Mus musculus GN=Tmed2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 39/140 (27.86%), Postives = 75/140 (53.57%), Query Frame = -3
Query:  218 VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 631
            +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  LV  ++ Q+Y L+R FE
Sbjct:   57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196          
BLAST of CN189675 vs. ExPASy Swiss-Prot
Match: TMED2_HUMAN (Transmembrane emp24 domain-containing protein 2 OS=Homo sapiens GN=TMED2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 39/140 (27.86%), Postives = 75/140 (53.57%), Query Frame = -3
Query:  218 VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 631
            +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  LV  ++ Q+Y L+R FE
Sbjct:   57 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 196          
BLAST of CN189675 vs. ExPASy Swiss-Prot
Match: TMED2_CRIGR (Transmembrane emp24 domain-containing protein 2 (Fragment) OS=Cricetulus griseus GN=TMED2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.788e-12
Identity = 39/140 (27.86%), Postives = 75/140 (53.57%), Query Frame = -3
Query:  218 VDLVVKGPASDQIHDFRDKISEKFEFVAHHKGVHRFCFTNK--SPYHETIDFDVHVGHFSYYDEHAKDEHFNPLLEQISKLEEALYNIQFEQHWLEAQTERQAIVNEAMSRRAVYKAFWESTALVGASVLQVYLLRRLFE 631
            +D+ + GP +  I+    + S K+ F AH  G ++FCF+N+  +   + + F + +G      +   + H N L E I++L  A+  ++ EQ ++E +      +N+  + R V  +F+E+  LV  ++ Q+Y L+R FE
Sbjct:   52 IDVEITGPDNKGIYKGDRESSGKYTFAAHMDGTYKFCFSNRMSTMTPKIVMFTIDIGEAPKGQDMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEALVLVAMTLGQIYYLKRFFE 191          
The following BLAST results are available for this feature:
BLAST of CN189675 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
TMED_NEMVE4.706e-1328.16Transmembrane emp24 domain-containing protein OS=N... [more]
TMED2_RAT1.788e-1227.86Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_MOUSE1.788e-1227.86Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_HUMAN1.788e-1227.86Transmembrane emp24 domain-containing protein 2 OS... [more]
TMED2_CRIGR1.788e-1227.86Transmembrane emp24 domain-containing protein 2 (F... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002D21_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002D21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189675 ID=CN189675; Name=CN189675; organism=Citrus sinensis; type=EST; length=765bp
TTTTTTTTTTTTTTTTTAACAAAAAGACCAATGTAAAGTCCTTGGATCTA
TTATCATTGAGATAACTATTCAAATGTATAATTTAGTTTCTGTAAGTGTT
CTTCTCTGGCCGGCAGATCACAAAAGAAACAAAAAACACGAAACAGCACT
AGGCTGTATAATCCTACAACTCATCGCTTGAGGACCAGAGCTAAACTCTG
GACATCCCAAGCTTCCTTTCGAACAGGCGGCGGAGGAGGTAGACTTGAAG
AACACTTGCACCGACAAGTGCAGTGGATTCCCAGAATGCTTTGTAAACTG
CCCTCCGACTCATTGCTTCATTTACTATTGCCTGGCGTTCGGTCTGCGCC
TCAAGCCAATGCTGTTCGAACTGAATGTTGTAAAGGGCTTCCTCCAATTT
GGATATCTGTTCTAGCAAAGGATTAAAATGCTCATCTTTGGCATGCTCAT
CATAGTATGAAAAGTGGCCAACATGTACATCAAAGTCTATGGTTTCATGA
TACGGAGACTTGTTTGTGAAGCAGAAGCGGTGGACTCCTTTATGATGGGC
CACAAACTCAAATTTCTCACTGATCTTATCACGAAAATCATGAATCTGAT
CACTAGCAGGTCCCTTCACCACAAGATCAACACCGTCGTGACTACTATAC
CAAGATGAATCAGCCTTAATGACAACAAATGAAGCATGAACCGTGTCGCC
TTCATATTGTACATTATGAGAAAAACATTCTTCTCTATCAATCACAAATC
TAATACCATAAACAG
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