EY679059

Overview
NameEY679059
Unique NameEY679059
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Sweet orange leaf, infected with CiLVcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOX2_ARATH (Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 9.513e-22
Identity = 50/81 (61.73%), Postives = 61/81 (75.31%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPAWGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGDKEKGVPYSISI 269
            SPDEE++G+ +E +W  +PVINAAFE+F G+L  LEG+IDERN + TL NR GAGVV Y LLKP  + G    GVPYSISI
Sbjct:  816 SPDEEYIGEQQEASWANEPVINAAFERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKPTSEHGVTGMGVPYSISI 896          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.343e-20
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPAWGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGDKEKGVPYSISI 269
            SPDEE++G+  EPAW  +P++ AAFEKFSGRL E EG ID RN +    NR GAG+VPY LLKP+ + G   +G+P SISI
Sbjct:  816 SPDEEYMGEYAEPAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSEPGVTGRGIPNSISI 896          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOXC1_ORYSJ (Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 3.871e-15
Identity = 38/81 (46.91%), Postives = 51/81 (62.96%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPAWGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGDKEKGVPYSISI 269
            S DEE+LG  +   W  D  + AA++ F+ RL E+EG+ID RN D  L NR GAG++PY L+KP+   G    G+P S SI
Sbjct:  844 STDEEYLGGEQTRPWNSDAAVQAAYDGFAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDSGVTGMGIPNSTSI 924          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOXC2_ORYSJ (Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.471e-14
Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPAWGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGDKEKGVPYSISI 269
            S DEE+LG  +   W  D  + AA+  F+ RL E+EG+ID RN D  L NR GAG++PY L+KP+   G    G+P S SI
Sbjct:  861 STDEEYLGGEQTRPWNSDAAVQAAYAGFTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSDAGVTGMGIPNSTSI 941          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOX21_HORVU (Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 8.072e-13
Identity = 42/93 (45.16%), Postives = 54/93 (58.06%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPAWGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGD------------KEKGVPYSISI 269
            S DEE++G  +EPAW +D VIN AFE+F     ++   +DE N D    NR+GAG+VPY LL+P   DGD             E G+P SISI
Sbjct:  846 SSDEEYMGTHEEPAWTKDGVINQAFEEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRP--SDGDPTDGDPTDEKMVMEMGIPNSISI 936          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOX3_ORYSJ (Putative lipoxygenase 3 OS=Oryza sativa subsp. japonica GN=Os03g0700400 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.522e-11
Identity = 40/87 (45.98%), Postives = 48/87 (55.17%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPAWGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKD------GDKEKGVPYSISI 269
            S DE +LG+   PAW  D     AF +FS RL+E+EG +   NGD+ L NRNG    PY LL P   D      G   KG+P SISI
Sbjct:  780 SSDEVYLGQRDTPAWTSDARALEAFRRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.391e-11
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPA-WGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGDKEKGVPYSISI 269
            SPDEE++G+ ++P+ W  D  I  AF  FS  +  +E  ID+RN D +  NR GAGV+PY L+ P  + G   +GVP S+SI
Sbjct:  845 SPDEEYIGERQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRDPSRRNRCGAGVLPYELMAPSSEPGVTCRGVPNSVSI 926          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.785e-11
Identity = 38/83 (45.78%), Postives = 50/83 (60.24%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPA--WGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGDKEKGVPYSISI 269
            SPDEE+L + +E    W +D  +   F KFS  L+++E  I+ERN D  L NR GAG+ PY LL P    G   +G+P SISI
Sbjct:  835 SPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPNSISI 917          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOX4_ORYSJ (Probable lipoxygenase 4 OS=Oryza sativa subsp. japonica GN=Os03g0700700 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 38/88 (43.18%), Postives = 49/88 (55.68%), Query Frame = 3
Query:   27 SPDEEFLGKGKEPAWGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGDKEK-------GVPYSISI 269
            S DE +LG+   P W  D     AF++F  RL+++E  I + NG+S L NRNG   +PY LL P   D  KEK       G+P SISI
Sbjct:  790 SSDEVYLGQRDTPEWTSDAKALDAFKRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877          
BLAST of EY679059 vs. ExPASy Swiss-Prot
Match: LOX1_SOLTU (Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 34/79 (43.04%), Postives = 49/79 (62.03%), Query Frame = 3
Query:   33 DEEFLGKGKEPAWGEDPVINAAFEKFSGRLMELEGIIDERNGDSTLVNRNGAGVVPYNLLKPYWKDGDKEKGVPYSISI 269
            DE +LG+ + P W +D    AAF++F  +L ++E  I +RNGD+ L NR+G    PY LL P  + G   KG+P S+SI
Sbjct:  783 DEIYLGQRESPEWTKDKEPLAAFDRFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEGGLTGKGIPNSVSI 861          
The following BLAST results are available for this feature:
BLAST of EY679059 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
LOX2_ARATH9.513e-2261.73Lipoxygenase 2, chloroplastic OS=Arabidopsis thali... [more]
LOX23_HORVU2.343e-2058.02Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
LOXC1_ORYSJ3.871e-1546.91Lipoxygenase 7, chloroplastic OS=Oryza sativa subs... [more]
LOXC2_ORYSJ1.471e-1446.91Probable lipoxygenase 8, chloroplastic OS=Oryza sa... [more]
LOX21_HORVU8.072e-1345.16Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare... [more]
LOX3_ORYSJ1.522e-1145.98Putative lipoxygenase 3 OS=Oryza sativa subsp. jap... [more]
LOX4_ARATH3.391e-1145.12Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ARATH5.785e-1145.78Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ORYSJ7.555e-1143.18Probable lipoxygenase 4 OS=Oryza sativa subsp. jap... [more]
LOX1_SOLTU7.555e-1143.04Lipoxygenase 1 OS=Solanum tuberosum GN=LOX1.1 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-401-054-F09-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679059 ID=EY679059; Name=EY679059; organism=Citrus sinensis; type=EST; length=465bp
CCCACGCGTCCGCGGACGCGTGGGATTCTCCTGATGAGGAGTTCTTAGGG
AAAGGTAAGGAGCCAGCATGGGGTGAAGATCCAGTCATAAACGCTGCATT
CGAGAAGTTTAGTGGCAGGTTGATGGAGCTTGAAGGAATTATTGATGAAA
GGAATGGAGATAGCACTTTGGTGAATAGAAATGGAGCTGGGGTTGTTCCA
TATAATCTCTTGAAGCCATATTGGAAAGATGGAGACAAAGAGAAAGGAGT
TCCATACAGCATCTCTATCTAGACTCGCTGAAGTCCGGGTCTTGTGCCAA
AACTTTCGAATGCATGCATTGGTGTTCGTCAACTTTAGTATGCATTGTAT
CTTTTTATTTACCTGTAATAAATGGACAACGATCCTCGTTTTAGTATGTT
ACTTTTATAAATAAAATTACCGCACTCACCAAGGTTCTTAAAAAAAAAAA
AAAAAAAAAAAAAAA
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