DR908828

Overview
NameDR908828
Unique NameDR908828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER12_ARATH (Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 2.009e-40
Identity = 81/119 (68.07%), Postives = 98/119 (82.35%), Query Frame = 3
Query:    3 ANNLKKTCPTSDSNNTTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNSNNLASVVEDVIEEAWSGI 359
            AN+LK+TCPT++S+NT V DIRSP+VFDNKYYVDLMNRQGL TSDQDL+ DKRTR IV SFA+DQ LFF  F  +MIKM Q+SVLTG QGEIR+ C+ +N+ +  SV+E+ IEEA S I
Sbjct:  240 ANSLKRTCPTANSSNTQVNDIRSPDVFDNKYYVDLMNRQGLFTSDQDLFVDKRTRGIVESFAIDQQLFFDYFTVAMIKMGQMSVLTGTQGEIRSNCSARNTQSFMSVLEEGIEEAISMI 358          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER37_ARATH (Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.376e-22
Identity = 57/121 (47.11%), Postives = 78/121 (64.46%), Query Frame = 3
Query:    6 NNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTD---KRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNS-NNLASVVEDVIEEAWS 353
            + L+K CP + + +  V FD+R+P +FDNKYYV+L   +GL+ SDQ+L++      T  +V  +A  Q  FF  FA +MI+MS LS LTGKQGEIR  C V NS + +  VVED +E A S
Sbjct:  225 STLRKQCPRNGNQSVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFSSPDASDTLPLVREYADGQGKFFDAFAKAMIRMSSLSPLTGKQGEIRLNCRVVNSKSKIMDVVEDALEFASS 345          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.309e-20
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 3
Query:   12 LKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKR---TRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNS-NNLASVVEDVIEEA 347
            L+K CP + + +  V FD+R+P +FDNKYYV+L   +GL+ SDQ+L++      T  +V ++A  Q  FF  F  ++I+MS LS LTGKQGEIR  C V NS + +  VV+D +E A
Sbjct:  227 LRKQCPRNGNQSVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFSSPDAADTLPLVRAYADGQGTFFDAFVKAIIRMSSLSPLTGKQGEIRLNCRVVNSKSKIMDVVDDALEFA 343          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER2_HORVU (Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 5.145e-20
Identity = 48/102 (47.06%), Postives = 65/102 (63.73%), Query Frame = 3
Query:    3 ANNLKKTCPTSDSNNTTV--FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKN 302
            A  L+  C   + + T     D+R+P+VFDNKYY DL+ RQGL  SDQ L     T+ + T F+++Q  FF++FA SM KMS + +LTG +GEIR  CAV N
Sbjct:   52 ATALRNKCSGDNPSGTLTQKLDVRTPDVFDNKYYFDLIARQGLFKSDQGLIDHPTTKRMATRFSLNQGAFFEQFARSMTKMSNMDILTGTKGEIRNNCAVPN 153          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.335e-19
Identity = 50/113 (44.25%), Postives = 70/113 (61.95%), Query Frame = 3
Query:    6 NNLKKTCPTSDSNN-TTVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLY--TDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNSNNLASVVEDV 335
            ++L++ CP + SN   T  D+ +P+ FDN Y+ +L +  GLL SDQ+L+  T   T  IV SFA +Q+LFF+ F  SMIKM  +S LTG  GEIR  C V N  + A+   D+
Sbjct:  233 SSLQQLCPQNGSNTGITNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSNTGSATVPIVNSFASNQTLFFEAFVQSMIKMGNISPLTGSSGEIRQDCKVVNGQSSATEAGDI 345          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.703e-19
Identity = 48/114 (42.11%), Postives = 72/114 (63.16%), Query Frame = 3
Query:   12 LKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKR---TRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNSNNLASVVEDVIE 341
            L++ CP + + +  V FD+R+P VFDNKYYV+L  ++GL+ SDQ+L++      T  +V SFA     FF  F  +M +M  ++ LTG QGEIR  C V NSN+L   + +V++
Sbjct:  233 LRQQCPLNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNSLLHDIVEVVD 346          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.655e-18
Identity = 47/114 (41.23%), Postives = 72/114 (63.16%), Query Frame = 3
Query:   12 LKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKR---TRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNSNNLASVVEDVIE 341
            L++ CP + + +  V FD+R+P VFDNKYYV+L  ++GL+ SDQ+L++      T  +V S+A     FF  F  +M +M  ++ LTG QGEIR  C V NSN+L   + +V++
Sbjct:  214 LRQQCPRNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSYADGTQTFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNSLLHDIVEVVD 327          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.162e-18
Identity = 49/104 (47.12%), Postives = 67/104 (64.42%), Query Frame = 3
Query:    6 NNLKKTCPTSDSNNT-TVFDIRSPNVFDNKYYVDLMNRQGLLTSDQDLY--TDKRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNSN 308
            + L++ CP + S +T T  D+ +P+ FDN Y+ +L +  GLL SDQ+L+  T   T +IVTSFA +Q+LFFQ FA SMI M  +S LTG  GEIR  C   N +
Sbjct:  232 STLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVNGS 335          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER2_ARMRU (Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.289e-18
Identity = 47/104 (45.19%), Postives = 66/104 (63.46%), Query Frame = 3
Query:    6 NNLKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTD---KRTRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNS 305
            + L+K CP + + +  V FD+R+P +FDNKYYV+L   +GL+ SDQ+L++      T  +V ++A  Q  FF  F  +MI+M  LS  TGKQGEIR  C V NS
Sbjct:  227 STLRKQCPRNGNLSVLVDFDLRTPTIFDNKYYVNLKENKGLIQSDQELFSSPDASDTIPLVRAYADGQGKFFDAFVEAMIRMGNLSPSTGKQGEIRLNCRVVNS 330          
BLAST of DR908828 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.214e-18
Identity = 46/114 (40.35%), Postives = 70/114 (61.40%), Query Frame = 3
Query:   12 LKKTCPTSDSNNTTV-FDIRSPNVFDNKYYVDLMNRQGLLTSDQDLYTDKR---TRSIVTSFAVDQSLFFQEFANSMIKMSQLSVLTGKQGEIRAKCAVKNSNNLASVVEDVIE 341
            L+  CP + + +  V FD+R+P VFDNKYYV+L  R+GL+ SDQ+L++      T  +V ++A     FF  F  +M +M  ++  TG QG+IR  C V NSN+L   V D+++
Sbjct:  235 LRGLCPLNGNRSALVDFDLRTPTVFDNKYYVNLKERKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNSLLHDVVDIVD 348          
The following BLAST results are available for this feature:
BLAST of DR908828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
PER12_ARATH2.009e-4068.07Peroxidase 12 OS=Arabidopsis thaliana GN=PER12 PE=... [more]
PER37_ARATH9.376e-2247.11Peroxidase 37 OS=Arabidopsis thaliana GN=PER37 PE=... [more]
PER38_ARATH2.309e-2045.30Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER2_HORVU5.145e-2047.06Peroxidase 2 (Fragment) OS=Hordeum vulgare PE=2 SV... [more]
PER54_ARATH3.335e-1944.25Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PER1B_ARMRU9.703e-1942.11Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER1C_ARMRU1.655e-1841.23Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER53_ARATH2.162e-1847.12Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PER2_ARMRU6.289e-1845.19Peroxidase C2 OS=Armoracia rusticana GN=PRXC2 PE=3... [more]
PER34_ARATH8.214e-1840.35Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16956 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_F12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908828 ID=DR908828; Name=DR908828; organism=Citrus sinensis; type=EST; length=574bp
TCGCCAACAATCTCAAAAAGACATGCCCCACTTCGGATTCCAACAACACC
ACCGTCTTCGACATCCGGTCCCCGAACGTGTTCGACAACAAGTACTACGT
TGACTTGATGAACCGACAGGGGTTGCTGACGTCGGACCAGGATCTTTACA
CGGACAAGAGAACGAGGAGCATTGTCACGAGCTTTGCTGTGGACCAGTCG
CTCTTCTTTCAAGAGTTTGCCAATTCGATGATAAAGATGTCGCAGTTGAG
TGTGCTCACGGGGAAGCAAGGAGAGATTAGAGCCAAGTGCGCCGTCAAGA
ATTCCAATAATTTGGCTTCTGTTGTTGAGGATGTAATTGAAGAGGCTTGG
TCTGGGATTATCTAAAATCTAGCTACCCCCCTCGCTTCAGGTTCAGGTTA
ACGTTGCTTGTTTCTTTGTGTTAATCTGTTTTGTTAATGTTTCGTTGTCT
TGCTCGCGCTTGTCTAGTTTGAATTCTGTCAATAAAGCTACTTGCTAGTT
AATATATATGTCCACTAGTAATCAAATTAGTAATTCTAAATAATCTCTGG
CTACATGCATAAATAAAAAAAAAA
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