DR908827

Overview
NameDR908827
Unique NameDR908827
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A1_ORYSJ (Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica GN=Os06g0701100 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.613e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNVVIEELPANVADLL
Sbjct:  332 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVVIEELPANVADLL 414          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF414_TOBAC (Eukaryotic initiation factor 4A-14 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.613e-40
Identity = 82/83 (98.80%), Postives = 83/83 (100.00%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A3_ORYSJ (Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica GN=Os02g0146600 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.603e-40
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQ+FYNV IEELPANVADLL
Sbjct:  332 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQRFYNVTIEELPANVADLL 414          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A1_ARATH (Eukaryotic initiation factor 4A-1 OS=Arabidopsis thaliana GN=TIF4A-1 PE=1 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 9.930e-40
Identity = 80/83 (96.39%), Postives = 83/83 (100.00%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVIN+DLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVV+EELP+NVADLL
Sbjct:  330 RVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVVEELPSNVADLL 412          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A_WHEAT (Eukaryotic initiation factor 4A OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.694e-39
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENY HRIGRSGRFGRKGVAINFVTR+DERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  332 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYQHRIGRSGRFGRKGVAINFVTREDERMLFDIQKFYNVVIEELPANVADLL 414          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A8_TOBAC (Eukaryotic initiation factor 4A-8 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.694e-39
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT DDERMLFDIQKFYNV+IEELP+NVADLL
Sbjct:  331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVIIEELPSNVADLL 413          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A6_TOBAC (Eukaryotic initiation factor 4A-6 (Fragment) OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.694e-39
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADL 246
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELPANVADL
Sbjct:  172 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADL 253          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF4A2_NICPL (Eukaryotic initiation factor 4A-2 OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.212e-39
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAIN VT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINSVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF411_TOBAC (Eukaryotic initiation factor 4A-11 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.212e-39
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIG SGRFGRKGV+INFVT+DDERMLFDIQKFYNVVIEELPANVADLL
Sbjct:  331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGHSGRFGRKGVSINFVTKDDERMLFDIQKFYNVVIEELPANVADLL 413          
BLAST of DR908827 vs. ExPASy Swiss-Prot
Match: IF410_TOBAC (Eukaryotic initiation factor 4A-10 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.212e-39
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 1
Query:    1 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTRDDERMLFDIQKFYNVVIEELPANVADLL 249
            RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVT+DDERML DIQKFYNVVIEELPANVADLL
Sbjct:  331 RVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLSDIQKFYNVVIEELPANVADLL 413          
The following BLAST results are available for this feature:
BLAST of DR908827 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
IF4A1_ORYSJ2.613e-4098.80Eukaryotic initiation factor 4A-1 OS=Oryza sativa ... [more]
IF414_TOBAC2.613e-4098.80Eukaryotic initiation factor 4A-14 OS=Nicotiana ta... [more]
IF4A3_ORYSJ7.603e-4097.59Eukaryotic initiation factor 4A-3 OS=Oryza sativa ... [more]
IF4A1_ARATH9.930e-4096.39Eukaryotic initiation factor 4A-1 OS=Arabidopsis t... [more]
IF4A_WHEAT1.694e-3997.59Eukaryotic initiation factor 4A OS=Triticum aestiv... [more]
IF4A8_TOBAC1.694e-3996.39Eukaryotic initiation factor 4A-8 OS=Nicotiana tab... [more]
IF4A6_TOBAC1.694e-3997.56Eukaryotic initiation factor 4A-6 (Fragment) OS=Ni... [more]
IF4A2_NICPL2.212e-3997.59Eukaryotic initiation factor 4A-2 OS=Nicotiana plu... [more]
IF411_TOBAC2.212e-3996.39Eukaryotic initiation factor 4A-11 OS=Nicotiana ta... [more]
IF410_TOBAC2.212e-3997.59Eukaryotic initiation factor 4A-10 OS=Nicotiana ta... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16955 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-34_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908827 ID=DR908827; Name=DR908827; organism=Citrus sinensis; type=EST; length=574bp
CGTGTGCTTATCACTACTGATCTCTTGGCACGTGGTATTGATGTCCAGCA
AGTGTCCCTGGTCATAAATTATGATCTTCCTACACAGCCAGAAAACTACC
TGCATCGTATAGGTCGTAGTGGACGATTTGGAAGAAAGGGTGTTGCCATT
AATTTCGTGACCAGGGATGATGAAAGGATGCTGTTTGATATTCAAAAGTT
TTACAATGTCGTAATTGAAGAGCTGCCAGCAAATGTTGCTGATCTCCTGT
GATGTGTTTTTGGATTGGTAAGGTGTTTTTGAAGTTTGAAGTCTAGTCAT
TATGGTGGGTCTGGAGTGGTTGCTAAAAGAACCCTACAATTATGGCATTT
GGAATGGCCTTTGTTTAAGTTTATGTTGCATCTGTTGTAGGTTTGCATTA
AATTATGTTGTTCTACACTTTTTTTTTAATTGTTGTGCGACATTATGTAG
AGTTGGAGCATGGCTAGTTTATTTGTCTTAGGAAAACTCGACTTGCTTGC
TTATTGCTTTTTAAAGTTATTTGGCTTGTTCTTTCATCTAATATAAACAA
GGCTGCATATTCAAAAAAAAAAAA
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