CN189672

Overview
NameCN189672
Unique NameCN189672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: PPAN_ARATH (Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.527e-79
Identity = 148/188 (78.72%), Postives = 161/188 (85.64%), Query Frame = 1
Query:  157 QPTVDHITGDKIPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            Q  V H+TGDKIPKSFVFSR KL GP++QL+MDLRKLMLP+TA            DFLNV+GPMGVTHFLMLSKT S+  LRVARTPQGPTLTFKIH+YSLA D+AQSQLRPRCPQDLFK+ PLIVLSGFG+ + HLKL TIMFQNIFPAIDINTVKLSTCQR+VLL YNKDTKLIDFRHYSIRL PV
Sbjct:   22 QEDVSHVTGDKIPKSFVFSRMKLAGPVKQLQMDLRKLMLPYTALSLKEKKRNTLRDFLNVSGPMGVTHFLMLSKTASSLSLRVARTPQGPTLTFKIHQYSLASDIAQSQLRPRCPQDLFKSPPLIVLSGFGSQELHLKLATIMFQNIFPAIDINTVKLSTCQRLVLLNYNKDTKLIDFRHYSIRLQPV 209          
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: SSF1_MOUSE (Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.801e-41
Identity = 82/176 (46.59%), Postives = 120/176 (68.18%), Query Frame = 1
Query:  193 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            P SFVF+RG+    +RQL +D+R++M P TA            D + VAGP+GVTHFL+L+KT+++ YL++ R P GPTLTF+I +Y+L  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++TV L+T +R +L+ YN D++ +DFRHYS+++ PV
Sbjct:   29 PHSFVFTRGRAGRNVRQLSLDVRRVMEPLTATRLQVRKKNSLKDCVAVAGPLGVTHFLILTKTDNSVYLKLMRLPGGPTLTFQISKYTLIRDVVSSLRRHRMHEQQFNHPPLLVLNSFGPQGMHIKLMATMFQNLFPSINVHTVNLNTIKRCLLINYNPDSQELDFRHYSVKVVPV 204          
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: SSF1_HUMAN (Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.308e-40
Identity = 83/176 (47.16%), Postives = 116/176 (65.91%), Query Frame = 1
Query:  193 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            P SFVF+RG     +RQL +D+R++M P TA            D + VAGP+GVTHFL+LSKTE+  Y ++ R P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++ V L+T +R +L+ YN D++ +DFRHYSI++ PV
Sbjct:   29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNVYFKLMRLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAHPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNPDSQELDFRHYSIKVVPV 204          
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: SSF1_PONAB (Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.635e-39
Identity = 82/176 (46.59%), Postives = 115/176 (65.34%), Query Frame = 1
Query:  193 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            P SFVF+RG     +RQL +D+R++M P TA            D + VAGP+GVTHFL+LSKTE+  Y ++   P GPTLTF++ +YSL  DV  S  R R  +  F   PL+VL+ FG    H+KL   MFQN+FP+I+++ V L+T +R +L+ YN D++ +DFRHYSI++ PV
Sbjct:   29 PHSFVFTRGCTGRNIRQLSLDVRRVMEPLTASRLQVRKKNSLKDCVAVAGPLGVTHFLILSKTETNIYFKLMHLPGGPTLTFQVKKYSLVRDVVSSLRRHRMHEQQFAYPPLLVLNSFGPHGMHVKLMATMFQNLFPSINVHKVNLNTIKRCLLIDYNHDSQELDFRHYSIKVVPV 204          
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: PPAN_DICDI (Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.598e-36
Identity = 74/177 (41.81%), Postives = 114/177 (64.41%), Query Frame = 1
Query:  190 IPKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            I KS V+ RG     +++L  + R++M P+TA            DF+N+A   GV+H +  S T+   Y+ +AR P+GPT TFKI EYS   DVA++++RP   +  +  SPL+VL+GF  G  HL++   M Q++FP+I++ T+KLSTC+R+VL  YNK+T  ++FRHY+I++  V
Sbjct:   45 ISKSIVYKRGDCNKGIKKLVKEFRQVMEPYTATKLQETSDNTTKDFVNIAAHYGVSHLVGFSSTDIGSYMAMARLPKGPTTTFKIQEYSFQRDVAKAKIRPTSFEKSYLNSPLVVLNGFTRGTPHLEMVQNMVQSLFPSINVYTLKLSTCKRVVLFNYNKETDNVEFRHYAIKVSNV 221          
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: PPAN_DROME (Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.683e-31
Identity = 66/176 (37.50%), Postives = 103/176 (58.52%), Query Frame = 1
Query:  193 PKSFVFSRGKLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQHLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            P SFV  RG     +  L +D R++M P TA            DF++++    V+H  + +K  +    +V R P+GP+LTFK+H+++LA DV     +     D FK +PL++++ F    +HLKL    FQN+FP+I++ TV + T +R VL  YN DTKL++ RHYS+++ PV
Sbjct:   28 PHSFVIHRGLACPYITDLTLDFRRIMEPFTASNLREKRMNRIKDFVSLSSFFHVSHMGIFNKASTQLSFKVVRLPRGPSLTFKVHQFTLARDVISLSKKQMIDNDHFKHAPLVIMNNFSGDGKHLKLMATTFQNMFPSINLATVNIGTIRRCVLFSYNPDTKLVEMRHYSVQVVPV 203          
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: YDD3_SCHPO (Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe GN=SPAC1B9.03c PE=1 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.228e-29
Identity = 75/190 (39.47%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  169 DHITGDKIPKSFVFSRG--KLPGPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESAPYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPRCPQDLFKTSPLIVLSGFGTGDQ----HLKLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            D I    IPKS V   G  ++   L  L  DLR +M PHTA            D+L +AGP+GVTH L+LS+T++   LR+ R P+GP+L F+IHEY L  DV + Q  P+ P   F T PL+V++ F         H  L T  FQN+FP I +    +++ +R++LL   +D   ID RH+ I   PV
Sbjct:   18 DPIQEAAIPKSMVIRSGASEVGRSLSLLTRDLRHMMEPHTAIRLKERKANKIKDYLTMAGPLGVTHLLVLSRTDNNANLRIIRAPRGPSLHFRIHEYMLNKDVRRLQKNPKSPTTEFLTPPLLVMNHFNQNSSKDSPHEALLTTTFQNMFPPISVQHTNINSVKRVLLLN-RRDDGYIDLRHFIISTKPV 206          
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: SSF2_YEAST (Ribosome biogenesis protein SSF2 OS=Saccharomyces cerevisiae GN=SSF2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 71/192 (36.98%), Postives = 104/192 (54.17%), Query Frame = 1
Query:  190 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESA--PYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPR-CPQDLFKTSPLIVLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH  M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+VL+GF T       DQ +   K+   MFQNIFP ++     L++ +RI ++  +++T  I  RHY I +  V
Sbjct:   22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAVKLKERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSDEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRIFMINKDRETGEISMRHYFIDIREV 213          
BLAST of CN189672 vs. ExPASy Swiss-Prot
Match: SSF1_YEAST (Ribosome biogenesis protein SSF1 OS=Saccharomyces cerevisiae GN=SSF1 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 70/192 (36.46%), Postives = 104/192 (54.17%), Query Frame = 1
Query:  190 IPKSFVFSRGKLP---GPLRQLEMDLRKLMLPHTAXXXXXXXXXXXXDFLNVAGPMGVTHFLMLSKTESA--PYLRVARTPQGPTLTFKIHEYSLAVDVAQSQLRPR-CPQDLFKTSPLIVLSGFGTG------DQHL---KLTTIMFQNIFPAIDINTVKLSTCQRIVLLXYNKDTKLIDFRHYSIRLPPV 720
            IPKS V   G+       L QL  D R++M PHTA            DF+ + GP+GVTH  M +++E      L++ARTPQGPT+TF++ +YSL  D+ +   RP+    D     PL+VL+GF T       DQ +   K+   MFQNIFP ++     L++ +R+ ++  +++T  I  RHY I +  V
Sbjct:   22 IPKSMVIRVGQTSLANHSLNQLVKDFRQIMQPHTAIKLKERKSNKLKDFVVMCGPLGVTHLFMFTQSEKTGNVSLKIARTPQGPTVTFQVLDYSLGRDIKKFLKRPKSLNNDDVLNPPLLVLNGFSTSKRSGEDDQDVNVEKVIVSMFQNIFPPLNPARTSLNSIKRVFMINKDRETGEISMRHYFIDIREV 213          
The following BLAST results are available for this feature:
BLAST of CN189672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PPAN_ARATH1.527e-7978.72Peter Pan-like protein OS=Arabidopsis thaliana GN=... [more]
SSF1_MOUSE4.801e-4146.59Suppressor of SWI4 1 homolog OS=Mus musculus GN=Pp... [more]
SSF1_HUMAN5.308e-4047.16Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PP... [more]
SSF1_PONAB2.635e-3946.59Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PP... [more]
PPAN_DICDI1.598e-3641.81Peter Pan-like protein OS=Dictyostelium discoideum... [more]
PPAN_DROME7.683e-3137.50Protein Peter pan OS=Drosophila melanogaster GN=pp... [more]
YDD3_SCHPO3.228e-2939.47Brix domain-containing protein C1B9.03c OS=Schizos... [more]
SSF2_YEAST6.965e-2436.98Ribosome biogenesis protein SSF2 OS=Saccharomyces ... [more]
SSF1_YEAST9.097e-2436.46Ribosome biogenesis protein SSF1 OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002D18_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189672 ID=CN189672; Name=CN189672; organism=Citrus sinensis; type=EST; length=722bp
GAGGACGACGAAGAACACTCTGCGCAGCAACAACCTTATAGATTTCAAGA
AGTGAAATAATTAATCAGGAAAGTTTGAAGTTGTGCCTACAAAGCCATGG
CTCGTTTCCGGAATAGTAAGAAGAAGGGATTTGTGAAGTCATTTGTGAAG
AAGAAGCAGCCGACTGTGGATCACATCACCGGTGATAAGATTCCAAAGAG
TTTTGTGTTTTCAAGAGGAAAGTTGCCTGGTCCTCTCAGGCAGCTTGAAA
TGGATTTAAGAAAGTTGATGCTTCCACACACTGCTCTCAACCTTAAGGAG
AAGAAACGGAATAATCTCAAGGACTTTCTGAATGTTGCAGGGCCAATGGG
TGTTACACATTTCCTCATGTTATCAAAGACTGAATCTGCACCCTACTTGA
GGGTTGCAAGGACCCCTCAGGGCCCAACTCTTACATTTAAAATACACGAG
TACTCATTAGCTGTTGATGTCGCCCAATCTCAATTGCGTCCTAGATGTCC
TCAAGATCTTTTCAAAACTTCTCCTTTGATTGTTCTTTCTGGTTTTGGAA
CTGGAGATCAACATCTAAAGCTCACAACTATTATGTTTCAGAACATCTTT
CCGGCTATTGATATCAACACTGTGAAGCTTTCGACTTGCCAGAGGATTGT
GTTGCTTANTTACAACAAAGACACAAAACTTATTGATTTTAGGCATTATT
CTATTAGACTGCCACCTGTGGG
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