CN189671

Overview
NameCN189671
Unique NameCN189671
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length677
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189671 vs. ExPASy Swiss-Prot
Match: PPAN_ARATH (Peter Pan-like protein OS=Arabidopsis thaliana GN=PPAN PE=1 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.341e-55
Identity = 106/126 (84.13%), Postives = 117/126 (92.86%), Query Frame = -3
Query:  298 LNFNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADDEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQK 675
            LN+NKDTKLIDFRHYSIRLQPVGVSRR+RKFVQ+HQVPDLR+LQDVSDFVTKAGYGSESE D+EAATVTL SDLGRVN+ +TKSAVKLQEIGPRMT+QL+KVEEGLC+G IIFSEY   G K+K K
Sbjct:  188 LNYNKDTKLIDFRHYSIRLQPVGVSRRIRKFVQNHQVPDLRNLQDVSDFVTKAGYGSESEGDEEAATVTLSSDLGRVNKGATKSAVKLQEIGPRMTMQLVKVEEGLCTGGIIFSEYDVDGKKEKLK 313          
BLAST of CN189671 vs. ExPASy Swiss-Prot
Match: PPAN_DROME (Protein Peter pan OS=Drosophila melanogaster GN=ppan PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.791e-24
Identity = 58/126 (46.03%), Postives = 87/126 (69.05%), Query Frame = -3
Query:  301 NFNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEA-DDEAATVTLVSDL-GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQ 672
            ++N DTKL++ RHYS+++ PVG+ R ++K V+   VP+L    +V DFVTK GY SESEA DDE + V L   L  + N    KS++KL EIGPR+T+QLIK+EEGL +G +++ ++    + +K+
Sbjct:  183 SYNPDTKLVEMRHYSVQVVPVGLKRAVQKIVKG-TVPNLGKCNEVVDFVTKDGYASESEAEDDEQSHVVLAQTLKSKGNLEDKKSSIKLHEIGPRLTMQLIKIEEGLLTGEVLYHDHVVKTEDEKE 307          
BLAST of CN189671 vs. ExPASy Swiss-Prot
Match: SSF1_MOUSE (Suppressor of SWI4 1 homolog OS=Mus musculus GN=Ppan PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 53/120 (44.17%), Postives = 82/120 (68.33%), Query Frame = -3
Query:  328 LNFNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYG---SESEADDEAATVTLVSDL-GRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 675
            +N+N D++ +DFRHYS+++ PVG SR ++K +Q  + P++  LQD+S+ +   G G   SE E D E  T  L   + GR N  + +SAV+L EIGPRMTLQLIK++EG+ +G+++F  +
Sbjct:  183 INYNPDSQELDFRHYSVKVVPVGASRGMKKLLQE-KFPNMSRLQDISELLA-TGVGLSDSEVEPDGEHNTTELPQAVAGRGNMQAQQSAVRLTEIGPRMTLQLIKIQEGVGNGNVLFHSF 300          
BLAST of CN189671 vs. ExPASy Swiss-Prot
Match: SSF1_HUMAN (Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PPAN PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 53/128 (41.41%), Postives = 84/128 (65.62%), Query Frame = -3
Query:  301 LNFNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEAD---DEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQ 675
            +++N D++ +DFRHYSI++ PVG SR ++K +Q  + P++  LQD+S+ +      SESEA+   D   T    +  GR N  + +SAV+L EIGPRMTLQLIKV+EG+  G ++F  + +  +++ Q
Sbjct:  183 IDYNPDSQELDFRHYSIKVVPVGASRGMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQSAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSFVSKTEEELQ 309          
BLAST of CN189671 vs. ExPASy Swiss-Prot
Match: SSF1_PONAB (Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PPAN PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 52/119 (43.70%), Postives = 79/119 (66.39%), Query Frame = -3
Query:  328 LNFNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEAD---DEAATVTLVSDLGRVNRASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 675
            +++N D++ +DFRHYSI++ PVG SR ++K +Q  + P++  LQD+S+ +      SESEA+   D   T    +  GR N  + +SAV+L EIGPRMTLQLIKV+EG+  G ++F  +
Sbjct:  183 IDYNHDSQELDFRHYSIKVVPVGASRGMKKLLQE-KFPNMSRLQDISELLATGAGLSESEAEPDGDHNITELPQAVAGRGNMRAQQSAVRLTEIGPRMTLQLIKVQEGVGEGKVMFHSF 300          
BLAST of CN189671 vs. ExPASy Swiss-Prot
Match: PPAN_DICDI (Peter Pan-like protein OS=Dictyostelium discoideum GN=ppan PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.530e-17
Identity = 47/139 (33.81%), Postives = 84/139 (60.43%), Query Frame = -3
Query:  298 NFNKDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQVPDLRSLQDVSDFVTKAGYGSESEADD------EAATVTLVSDLGRVN--------RASTKSAVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEYGTVGDKKKQK 672
            N+NK+T  ++FRHY+I++  VGV+R +++ +QS ++PD+ +L D+SD+V      +ES+ +D      E ++  + S    +           + K A+KL+EIGPRM L L+KVE+ L  G +++ +Y    D +K++
Sbjct:  201 NYNKETDNVEFRHYAIKVSNVGVNRSIKRIIQS-KIPDISNLGDISDYVMNGLGATESDYEDANDGQVELSSKMINSKAKNIKLERKGLDINTTQKRAIKLEEIGPRMNLSLLKVEDDLYKGEVLYHQYIKKSDIEKEE 338          
BLAST of CN189671 vs. ExPASy Swiss-Prot
Match: YDD3_SCHPO (Brix domain-containing protein C1B9.03c OS=Schizosaccharomyces pombe GN=SPAC1B9.03c PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/129 (34.11%), Postives = 71/129 (55.04%), Query Frame = -3
Query:  328 KDTKLIDFRHYSIRLQPVGVSRRLRKFVQSHQ----VPDLRSLQDVSDFVTK----AGYGSESEADDEAA--------TVTLVSDLGRVNRASTKS-AVKLQEIGPRMTLQLIKVEEGLCSGSIIFSEY 663
            +D   ID RH+ I  +PVG+SR +R  ++  +    +PDL +++D+SD+V      +G  S+SE +++A         T T  + L        K  A+KL EIGPRMTL+LIK+ E    G +++  +
Sbjct:  189 RDDGYIDLRHFIISTKPVGISRPIRHLLKGEKKDSDIPDLHNVRDISDYVLHGDGISGAASDSEIEEDATVEIDRPVPTKTEENLLSASQLLKPKQQAIKLIEIGPRMTLELIKITEDAMGGKVLYHSH 317          
The following BLAST results are available for this feature:
BLAST of CN189671 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PPAN_ARATH2.341e-5584.13Peter Pan-like protein OS=Arabidopsis thaliana GN=... [more]
PPAN_DROME2.791e-2446.03Protein Peter pan OS=Drosophila melanogaster GN=pp... [more]
SSF1_MOUSE5.447e-2044.17Suppressor of SWI4 1 homolog OS=Mus musculus GN=Pp... [more]
SSF1_HUMAN7.114e-2041.41Suppressor of SWI4 1 homolog OS=Homo sapiens GN=PP... [more]
SSF1_PONAB9.291e-2043.70Suppressor of SWI4 1 homolog OS=Pongo abelii GN=PP... [more]
PPAN_DICDI2.530e-1733.81Peter Pan-like protein OS=Dictyostelium discoideum... [more]
YDD3_SCHPO7.130e-1234.11Brix domain-containing protein C1B9.03c OS=Schizos... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002D18_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002D18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189671 ID=CN189671; Name=CN189671; organism=Citrus sinensis; type=EST; length=677bp
TTTTTTTTTTTTTTTTAGTTTAAATTTTTATTTTTTTATTTTTTTCCCTA
TTACAGAAAACAAAAATAAGAGGGCATGGGCATCAGTATTACTAGTGCCA
ATGCTGCCAATATACAGTAATTGATAACCAAATCTCCGCATATAGGCATC
TTCCCGTAGTACCAAATATCCCTCAGAAGCAACTTCACCGATCAAAAAAC
TACAACACCCTAATTCGGAAAGGTACTAATCTTCCTCGCTGCCTTTAACA
TCTTCCTCACTTTCTTCATCGTCTTCCTGATTCTCCTGCTTGCTTCCTTT
CTGTTTTTTCTTGTCACCAACAGTTCCATATTCACTGAAGATGATACTAC
CAGAACACAATCCTTCCTCAACCTTGATGAGTTGTAAAGTCATTCTGGGT
CCAATCTCTTGAAGCTTTACAGCACTTTTTGTAGAAGCTCGGTTAACTCT
ACCAAGATCACTTACCAGTGTCACTGTTGCTGCTTCATCATCAGCTTCAC
TTTCTGATCCATAACCAGCCTTGGTGACAAAATCACTCACATCTTGGAGA
CTCCTGAGATCTGGAACTTGATGGCTCTGAACAAATTTTCTTAGTCTACG
GGAAACACCCACAGGTTGCAGTCTAATAGAATAATGCCTAAAATCAATAA
GTTTTGTGTCTTTGTTGAAATTAAGCA
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