DR908790

Overview
NameDR908790
Unique NameDR908790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908790 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 43/114 (37.72%), Postives = 60/114 (52.63%), Query Frame = 3
Query:  210 TSSPLSKAKLPIVVFIHGGGFCAGSREWPNSHNCCFRXXXXXXXXXXXXDYRLAPEHRLPAAMEDAFAAMKWLQAQALSENLNGDAWFGEVEFDNVFVLGDSSGGNIAHHLAVQ 551
            T +P ++   P+++F HGG F   S       + C R            +YR APEHR P A +D + A+KW+ +Q    +  GDA         VF+ GDSSGGNIAHH+AV+
Sbjct:  105 TDAPAAEP-FPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMSQPFMRS-GGDAQ------ARVFLSGDSSGGNIAHHVAVR 210          
BLAST of DR908790 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.256e-14
Identity = 49/153 (32.03%), Postives = 71/153 (46.41%), Query Frame = 3
Query:  120 NDESSVFFKDCQYDKIHDLHLRLYKPRSETTS-------SPLSKAKLPIVVFIHGGGFCAGSREWPNSHNCCFRXXXXXXXXXXXXDYRLAPEHRLPAAMEDAFAAMKWLQAQALSENLNGDAWFGEVEFDNV--FVLGDSSGGNIAHHLAVQ 551
            N  + VF  D   D+  +L  R+Y+P    TS       +P+    +P++VF HGG F   S         C R            +YR APE+R P A +D +A +KW         +N  +W    +   V  F+ GDSSGGNI H++AV+
Sbjct:   58 NPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKW---------VNSSSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVR 201          
BLAST of DR908790 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.048e-12
Identity = 55/180 (30.56%), Postives = 81/180 (45.00%), Query Frame = 3
Query:   72 VFRSKDIKFNMQL---IDQNDESSVF-----FKDCQYDKIHDLHLRLYKPRSET---------TSSPLSKAKL-PIVVFIHGGGFCAGSREWPNSHNCCFRXXXXXXXXXXXXDYRLAPEHRLPAAMEDAFAAMKWLQAQALSENLNGDAWFGEVEFDNVFV--LGDSSGGNIAHHLAVQ 551
            V R  D  FN  L   +D+   ++ F     F     D   +L  R+Y+P S            + PLS  ++ P+++F HGG F   S         C R            DYR +PEHR P A +D + A+ W++++          W    +  NV+V   GDSSGGNIAH++AV+
Sbjct:   33 VLRRPDGSFNRDLAEFLDRKVPANSFPLDGVFSFDHVDSTTNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSR---------VWLQSGKDSNVYVYLAGDSSGGNIAHNVAVR 203          
BLAST of DR908790 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.976e-11
Identity = 51/182 (28.02%), Postives = 75/182 (41.21%), Query Frame = 3
Query:   72 VFRSKDIKFNMQLIDQNDES---------SVFFKDCQYDKIHDLHLRLYKPRSETTSSPLSKAKL---------PIVVFIHGGGFCAGSREWPNSHNCCFRXXXXXXXXXXXXDYRLAPEHRLPAAMEDAFAAMKWLQAQALSENLNGDAWFGEVEFD--NVFVLGDSSGGNIAHHLAVQLG 557
            + R  D  FN  L +  D            VF  D   D+  +L  R+Y+P       P S   L         P+++F HGG F   S         C R            +YR APE+  P A +D + A+ W         +N  +W    +    ++F+ GDSSGGNIAH++A++ G
Sbjct:   33 ILRRPDGTFNRHLAEYLDRKVTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNW---------VNSRSWLKSKKDSKVHIFLAGDSSGGNIAHNVALRAG 205          
The following BLAST results are available for this feature:
BLAST of DR908790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GID1_ORYSJ7.256e-1437.72Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
GI1L3_ARATH7.256e-1432.03Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L2_ARATH1.048e-1230.56Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GI1L1_ARATH1.976e-1128.02Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16918 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-10_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908790 ID=DR908790; Name=DR908790; organism=Citrus sinensis; type=EST; length=580bp
TAAAGATGGGTTCCCTTCCTTGCGTTGTCGAAGACATGGGAGGTGTCCTT
CAACTATACAGTGATGGCACAGTTTTCAGGTCCAAAGATATCAAGTTTAA
CATGCAGTTGATCGATCAAAACGACGAGTCATCAGTCTTCTTCAAGGACT
GTCAATATGACAAGATCCACGACTTGCACCTCCGTTTATACAAACCCAGA
TCAGAAACGACGTCTTCTCCGCTGTCTAAAGCTAAGCTTCCCATTGTGGT
ATTCATTCACGGGGGAGGCTTTTGCGCCGGGTCACGAGAGTGGCCAAACT
CTCACAACTGTTGCTTCCGCCTGGCCGCTGAGCTCAACGCTCTCGTTGTT
GCCCTAGACTACAGGCTGGCGCCGGAACACCGGCTCCCGGCTGCGATGGA
AGATGCTTTTGCTGCCATGAAATGGCTGCAAGCTCAGGCTTTAAGTGAAA
ATCTTAATGGGGATGCATGGTTTGGTGAAGTTGAATTTGATAATGTTTTC
GTTCTTGGAGATTCCTCCGGGGGGAATATTGCTCATCATTTGGCGGTTCA
GCTCGGCGGCGGTTCGAGCGAGTTGGCTCC
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