CN189587

Overview
NameCN189587
Unique NameCN189587
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 4.090e-63
Identity = 130/224 (58.04%), Postives = 151/224 (67.41%), Query Frame = 3
Query:   66 MADEHKHEE------PA-----GESVKEKITEKIH-------GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLL 683
            MA+EHKH+E      PA      ES+ +KI+EKIH                              +K+KV+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV            +CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F  LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL YI  VLL
Sbjct:    1 MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLL 224          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 9.112e-63
Identity = 127/206 (61.65%), Postives = 146/206 (70.87%), Query Frame = 3
Query:   66 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLL 683
            MA+EHKHEE    S+ EKI+EKIHGH                     LKTK++RLFGRE+P+HK+ GGGKPAD+FLWRNKK+S GVLG AT  W+              H  I+ALAVLFLWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR F +LR+IASGRDLKKFL VIAGLWV+S VGS CNFLTL YI  VLL
Sbjct:    1 MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSDDDKNSAS---LKTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLL 199          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 3.463e-62
Identity = 123/207 (59.42%), Postives = 141/207 (68.12%), Query Frame = 3
Query:   66 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXX-LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLL 683
            M ++HKHEE    S+ EKI EKIHGH                       K+K++RLFGREKPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WV            +CH  I ALA LFLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR   LLR IASG+D+KKF+ VIAGLWV+SI+GS  NFLTLFY   VLL
Sbjct:    1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLL 203          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.522e-62
Identity = 126/220 (57.27%), Postives = 149/220 (67.73%), Query Frame = 3
Query:   66 MADEHKHEEPAG-----------ESVKEKITEKIH---GHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLL 683
            MADEHKHEE +            ES+ EK++EKIH                          LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WV            +CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR    LREIASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VLL
Sbjct:    1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPKSLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLL 220          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 1.608e-59
Identity = 115/207 (55.56%), Postives = 143/207 (69.08%), Query Frame = 3
Query:   66 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLH 686
            MA+E +   P  ES+ EKI+EKIH H                     +K K++R+FGREKPVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWV            +CH  I+AL  LFLWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LH
Sbjct:    1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILH 204          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 3.962e-58
Identity = 117/207 (56.52%), Postives = 140/207 (67.63%), Query Frame = 3
Query:   66 MADEHKHEEPAGESVKEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLH 686
            MA+E +      ES+ EKI +KIH H                     LK K++RLFGREKPVHKVLGGG PADVFLWR+KK+SA VLG ATAIWV            VCH LI ALA LFL SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+ GLW++S+VG+W NFLTL YI FV+LH
Sbjct:    1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLH 204          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.368e-42
Identity = 79/160 (49.38%), Postives = 111/160 (69.38%), Query Frame = 3
Query:  207 LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLH 686
            +   ++R+FGRE+P+H VLGGGKPADV LWR+KK++ G+L   T IW+            +C   I+ L + FLWSNA   +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS++G+W +FL+L YI FVL+H
Sbjct:   47 INAPIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIH 203          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 76/154 (49.35%), Postives = 103/154 (66.88%), Query Frame = 3
Query:  225 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLH 686
            RLF R+KP+H VLGGGK ADV LWRNKKISA VL GATAIWV            VC+ L++ +   F+WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  + GLWV ++VGS CNFLT+ YI FV  H
Sbjct:   44 RLFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAH 197          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.985e-25
Identity = 55/154 (35.71%), Postives = 84/154 (54.55%), Query Frame = 3
Query:  216 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFV 677
            K  +LF R++ +H + GGGK AD+ LWR  KI+A ++ G + +W             +CH  + ++   F+WS AS F+N   P IPEV + E    QLA +     N+    L ++A GRD   F      L++VSI+G++ NF+ L +I FV
Sbjct:   19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFV 172          
BLAST of CN189587 vs. ExPASy Swiss-Prot
Match: RTNLL_ARATH (Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.606e-21
Identity = 47/145 (32.41%), Postives = 82/145 (56.55%), Query Frame = 3
Query:  225 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVXXXXXXXXXXXXVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFPLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTL 659
            +LF R++ +H++LGGG  ADV LWR K +S G++    A W+            +   L++ L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD + +  V   L+++S++GS  +F TL
Sbjct:    7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDSELYTKVAVSLFLLSLIGSLMDFQTL 151          
The following BLAST results are available for this feature:
BLAST of CN189587 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLA_ARATH4.090e-6358.04Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH9.112e-6361.65Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH3.463e-6259.42Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH4.522e-6257.27Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH1.608e-5955.56Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH3.962e-5856.52Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH1.368e-4249.38Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH4.554e-3849.35Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH1.985e-2535.71Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLL_ARATH6.606e-2132.41Reticulon-like protein B12 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B16_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189587 ID=CN189587; Name=CN189587; organism=Citrus sinensis; type=EST; length=688bp
GAGGTTCATTTCTCAAAGTTAAAAGGTTTGAAAACACCGACTGAGGGATT
TGTACAGAGAGCGAGATGGCTGACGAGCATAAACACGAGGAACCAGCCGG
TGAATCGGTGAAGGAGAAGATAACGGAGAAGATCCACGGCCACGATTCGT
CGTCGTCGTCATCGTCATCTGACTCCGATGATGATAAGAAGTCATCTGCA
TCCTCCCTCAAGACCAAAGTATTTCGTCTCTTCGGAAGAGAAAAGCCTGT
TCACAAGGTTCTTGGTGGCGGAAAACCTGCGGATGTTTTCTTATGGAGGA
ACAAGAAGATTTCAGCAGGAGTACTTGGTGGGGCTACTGCAATATGGGTT
CTTTTTGAATTGCTTGAGTACCACCTTCTAACTCTTGTCTGTCACTGCCT
GATTGTTGCACTTGCGGTGCTTTTCTTGTGGTCTAATGCTTCCACCTTCA
TTAACAAGTCTCCACCACGCATTCCAGAAGTATATATCCCTGAGGAACCA
GTTTTACAGTTGGCCTCTGCACTTAGGTTTGAGATCAATAGGGCCTTCCC
TCTTCTGAGGGAAATAGCATCTGGAAGAGATCTGAAGAAGTTTCTCTCGG
TGATTGCTGGCTTGTGGGTTGTGTCGATTGTGGGGAGCTGGTGCAATTTC
TTGACCTTGTTCTACATAGTTTTTGTACTGCTTCACAC
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