CN189585

Overview
NameCN189585
Unique NameCN189585
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length735
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.072e-51
Identity = 103/212 (48.58%), Postives = 133/212 (62.74%), Query Frame = 1
Query:   40 GAKNQKGSAPNALPVKEQNVLTNGTAEDENDKISLSPDRDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 675
            GA +   S  NA P    +V ++   E    K+  +     YN  +F       + F+IKSYSEDD+H+SIKYS+W ST +GNK+LD A++    K    PV+LLFSVN SG F G+AEM  PVD+  +   W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  343 GANSDSNSVGNAQPTSAPSVESHPVLE----KLKAA---HSYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 544          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.074e-51
Identity = 97/173 (56.07%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  157 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 675
            + YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K    PV+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  396 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 4.074e-51
Identity = 97/173 (56.07%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  157 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 675
            + YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K    PV+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  396 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 565          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 4.074e-51
Identity = 97/173 (56.07%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  157 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 675
            + YN  DF       + F+IKSYSEDD+H+SIKY++W ST +GNK+LDAAY+    K    PV+LLFSVN SG F G+AEM   VD+N     W QDKW G F V+W  VKDVPNS L+HI LENNENKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  397 NNYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKG---PVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWSQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENKPVTNSRDTQEVPLEKAKQVLKIIASYKHTTSIFDDFSHYEKRQE 566          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.548e-50
Identity = 96/173 (55.49%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  157 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 675
            + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K    P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.548e-50
Identity = 96/173 (55.49%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  157 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 675
            + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K    P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.548e-50
Identity = 96/173 (55.49%), Postives = 119/173 (68.79%), Query Frame = 1
Query:  157 DEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 675
            + YN  DF     + + F+IKSYSEDD+H+SIKYS+W ST +GNK+LDAAY+    K    P++LLFSVN SG F G+AEM   VD+N     W QDKW G F VKW  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI       T I DDF  YE RQ+
Sbjct:  402 NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKG---PLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIIATFKHTTSIFDDFAHYEKRQE 571          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 5.883e-50
Identity = 93/171 (54.39%), Postives = 119/171 (69.59%), Query Frame = 1
Query:  163 YNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPSKTCILDDFGFYETRQK 675
            YN  +F       + F+IKSYSEDD+H+SIKYS+W ST +GNK+LD+A++    K    PV+LLFSVN SG F G+AEM  PVD+  +   W QDKW G F V+W  VKDVPN+ L+HI LENN+NKPVTNSRDTQE+ LE+  +++KI   +   T I DDF  YE RQ+
Sbjct:  377 YNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKG---PVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVWSQDKWKGKFDVQWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLEKAKQVLKIISSYKHTTSIFDDFAHYEKRQE 544          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YD374_YEAST (YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae GN=YDR374C PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.320e-25
Identity = 60/145 (41.38%), Postives = 90/145 (62.07%), Query Frame = 1
Query:  196 DAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYWQQD-KWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIFKDHPS 627
            +++FFVIKS S   V +S    +W+ST  GNK+L  AY++    ++   VFL FS+NTSG+F G+AEM   +  + +   W+ + K+   F V+W IV+D+ N  LK   + +NE KP+T+SRDTQEI    G+ +I +FK   S
Sbjct:  154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAK---VFLFFSINTSGRFCGVAEMVSDLKMDLDTSIWEDEQKYGKAFKVRWVIVRDINNRSLKRFLIPSNEMKPITHSRDTQEIPYSIGISIINLFKTQDS 295          
BLAST of CN189585 vs. ExPASy Swiss-Prot
Match: YTDC1_HUMAN (YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.788e-14
Identity = 54/175 (30.86%), Postives = 92/175 (52.57%), Query Frame = 1
Query:  115 AEDENDKISLSPD---RDEYNKADFPEEYTDAKFFVIKSYSEDDVHKSIKYSVWASTPNGNKKLDAAYQEAQQKSRSCPVFLLFSVNTSGQFVGLAEMAGPVDFNKNVEYW------QQDKWTGCFPVKWHIVKDVPNSLLKHITLENNENKPVTNSRDTQEIKLEQGLKLIKIF 612
            +E +++K+S S     +D+ +K  +  +  DA+FF+IKS + ++V  +    VW++ P   KKL+ A++ A+       V L+FSV  SG+F G A ++       +  +W            G F + W   +++P +   H+T   NE+KPV   RD QEI+LE G +L  +F
Sbjct:  326 SEKKHEKLSSSVRAVRKDQTSKLKYVLQ--DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARS------VILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLF 492          
The following BLAST results are available for this feature:
BLAST of CN189585 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YTHD1_MOUSE1.072e-5148.58YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD2_MACFA4.074e-5156.07YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN4.074e-5156.07YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN4.074e-5156.07YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD3_PONAB1.548e-5055.49YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE1.548e-5055.49YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN1.548e-5055.49YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
YTHD1_HUMAN5.883e-5054.39YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
YD374_YEAST1.320e-2541.38YTH domain-containing protein YDR374C OS=Saccharom... [more]
YTDC1_HUMAN1.788e-1430.86YTH domain-containing protein 1 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B15_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189585 ID=CN189585; Name=CN189585; organism=Citrus sinensis; type=EST; length=735bp
GATGGATTGAATGAGCTTAATAGGGGACCTAGAGCCAAGGGAGCAAAAAA
CCAAAAGGGTTCAGCACCCAATGCTTTACCAGTCAAAGAGCAGAATGTGC
TAACAAATGGGACCGCTGAGGATGAGAATGATAAGATTAGTTTGAGTCCT
GACAGAGATGAATACAATAAAGCAGATTTCCCAGAAGAGTACACTGATGC
TAAATTCTTTGTCATCAAATCGTACAGTGAGGATGATGTCCATAAAAGTA
TCAAGTACAGTGTTTGGGCCAGCACCCCCAATGGCAACAAGAAGCTTGAT
GCTGCTTACCAGGAGGCTCAACAGAAGTCTCGCAGCTGCCCTGTATTTCT
TCTCTTTTCGGTTAACACAAGTGGACAGTTTGTTGGCCTTGCGGAGATGG
CTGGACCGGTTGATTTTAACAAAAACGTGGAGTACTGGCAACAAGACAAA
TGGACTGGCTGTTTTCCGGTGAAGTGGCACATTGTCAAGGATGTACCAAA
TAGTTTGTTGAAGCACATTACTCTCGAGAATAATGAGAACAAGCCTGTCA
CTAACAGTAGGGACACTCAAGAGATCAAGTTAGAGCAGGGACTTAAATTG
ATCAAAATATTCAAGGATCACCCAAGTAAAACGTGCATTCTGGATGATTT
TGGGTTTTATGAGACTCGCCAGAAAACCATTCAGGAAAAGAAGGCTAAAC
AACAGCAGTTCCAGAAACAGGTATGGGGAAGGAAA
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