CN189578

Overview
NameCN189578
Unique NameCN189578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length333
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 2.161e-50
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FSTDVEKHV EA+IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKIL HNS+GI FQILSNPEFLAEGTAI DLF PD+VLI
Sbjct:   68 FSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLI 176
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 2.822e-50
Identity = 101/109 (92.66%), Postives = 104/109 (95.41%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FSTDVEKHVREA+IVFVSVNTPTKT GLGAGKAADLTYWESAARMIADVS SDKIVVEKSTVPVKTAEAIEKILMHNS+GI FQILSNPEFLAEGTAI DLF PD+VLI
Sbjct:   68 FSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLI 176
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 4.814e-50
Identity = 100/109 (91.74%), Postives = 104/109 (95.41%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSRGINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FSTDVEKHVREA+IVFVSVNTPTKT+GLGAGKAADLTYWESAARMIADVS SDKIVVEKSTVPVKTAEAIEKIL HNS+GI FQILSNPEFLAEGTAI DLF PD+VLI
Sbjct:   68 FSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSDKIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLI 176
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 6.316e-34
Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FSTD+E  ++EA+++F+SVNTPTKT G G G+AADL Y ESAARMIA++++S+KIVVEKSTVPV+ AE+I  IL  N + GI++ ILSNPEFLAEGTAINDL   D+VLI
Sbjct:   67 FSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNKIVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLI 176
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.227e-30
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FST+++  +REA++VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N++  +N Q+LSNPEFLAEGTAI DL  PD+VLI
Sbjct:   71 FSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI 180
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.227e-30
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FST+++  +REA++VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N++  +N Q+LSNPEFLAEGTAI DL  PD+VLI
Sbjct:   71 FSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI 180
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.610e-29
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FST+++  ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N++  +N Q+LSNPEFLAEGTAI DL  PD+VLI
Sbjct:   71 FSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI 180
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.610e-29
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FST+++  ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N++  +N Q+LSNPEFLAEGTAI DL  PD+VLI
Sbjct:   71 FSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI 180
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 2.103e-29
Identity = 65/110 (59.09%), Postives = 84/110 (76.36%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FST+++  ++EA++VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N++  +N Q+LSNPEFLAEGTAI DL  PD+VLI
Sbjct:   71 FSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLI 180
[Close]
BLAST of CN189578 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.587e-29
Identity = 65/110 (59.09%), Postives = 83/110 (75.45%), Query Frame = 3 
Query:    6 FSTDVEKHVREANIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILMHNSR-GINFQILSNPEFLAEGTAINDLFKPDQVLI 332
            FST ++  +REA++VF+SVNTPTKT G+G G+AADL Y E+ AR I   S   KIV EKSTVPV+ AE+I +I   N++  ++ Q+LSNPEFLAEGTAI DL  PD+VLI
Sbjct:   71 FSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLI 180
The following BLAST results are available for this feature:
BLAST of CN189578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UGDH_SOYBN2.161e-5092.66UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH2_ARATH2.822e-5092.66Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH1_ARATH4.814e-5091.74Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH_DROME6.316e-3466.36UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_RAT7.227e-3060.00UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_MOUSE7.227e-3060.00UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_PONAB1.610e-2959.09UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN1.610e-2959.09UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_BOVIN2.103e-2959.09UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_CHICK3.587e-2959.09UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B11_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189578 ID=CN189578; Name=CN189578; organism=Citrus sinensis; type=EST; length=333bp
GAGGCTTTAGTACTGATGTGGAGAAACATGTTAGAGAGGCTAATATAGTT
TTTGTTTCGGTTAACACTCCAACAAAAACCCAAGGTCTTGGAGCTGGGAA
AGCTGCTGATCTGACGTATTGGGAGAGTGCTGCACGTATGATTGCTGATG
TCTCGAAATCTGACAAAATAGTGGTCGAGAAATCAACCGTTCCTGTCAAA
ACAGCTGAGGCTATAGAAAAGATTTTGATGCATAATTCTAGAGGAATTAA
CTTTCAAATTTTGTCCAACCCAGAGTTCCTTGCAGAGGGAACTGCCATTA
ATGATCTTTTTAAACCTGATCAGGTCCTTATTG
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