CN189577

Overview
NameCN189577
Unique NameCN189577
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 3.733e-47
Identity = 85/103 (82.52%), Postives = 95/103 (92.23%), Query Frame = -3
Query:  259 MNKFDWDHPIHLQPTSLSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 567
            MNKFDWDHPIHLQPTS +T+ +V V  DAYEATKD+HG+CILTEWDEFK LDYQKI++NMQKPAFVFDGRNI+D +KLR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct:  378 MNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.086e-46
Identity = 82/103 (79.61%), Postives = 96/103 (93.20%), Query Frame = -3
Query:  259 MNKFDWDHPIHLQPTSLSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPAVA 567
            MNKFDWDHP+HLQP S +T+ QV V  DAYEATKD+HG+CI+TEWDEFKNLD+QKI++NMQKPAFVFDGRNI++++KLR+IGFIVYSIGKPLD WLKDMPAVA
Sbjct:  378 MNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMTEWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.265e-44
Identity = 79/101 (78.22%), Postives = 91/101 (90.10%), Query Frame = -3
Query:  265 MNKFDWDHPIHLQPTSLSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDKWLKDMPA 567
            M KFDWDHP+HLQP S +T+ QV V  DAYEATKD+H VC+LTEWDEFK+LDYQKI++NMQKPAF+FDGRNI++V KLR+IGFIVYSIGKPLD WLKDMPA
Sbjct:  378 MKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.592e-16
Identity = 37/68 (54.41%), Postives = 52/68 (76.47%), Query Frame = -3
Query:  298 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGK 501
            V + SD Y A + +H + I TEWDEF +LD+++IY +M KPA++FDGR ILD E+L++IGF V +IGK
Sbjct:  392 VQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.768e-15
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = -3
Query:  286 TSLSTINQVI-VASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILDVEKLRKIGFIVYSIGKPLDK 525
            TS   + ++I V SD Y A + +H + +LTEWDEF  L+Y +I+N+MQ PA +FDGR ILD + LR+IGF  ++IG   D+
Sbjct:  391 TSAQDVERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQ 471          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  298 DWDHPIHLQPTSLSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 555
            D  HP   +   +S +  V ++ D YEA   +H V I TEWD FK LDY++I+  M KPAF+FDGR +LD    +L+ IGF + +IGK
Sbjct:  379 DLSHPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.441e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  298 DWDHPIHLQPTSLSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 555
            D  HP   +   +S +  V ++ D YEA   +H V I TEWD FK LDY++I+  M KPAF+FDGR +LD    +L+ IGF + +IGK
Sbjct:  379 DLSHPGVSEDDQVSRL--VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 39/88 (44.32%), Postives = 55/88 (62.50%), Query Frame = -3
Query:  298 DWDHPIHLQPTSLSTINQVIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 555
            D  HP   +   +S +  V ++ D YEA   +H + I TEWD FK LDY++I+  M KPAF+FDGR +LD    +L+ IGF + +IGK
Sbjct:  379 DLSHPGVSEDNQVSRL--VTISQDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK 464          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.212e-13
Identity = 36/70 (51.43%), Postives = 48/70 (68.57%), Query Frame = -3
Query:  298 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 501
            V ++ D YEA   +H V I TEWD FK LDY++I+  M KPAF+FDGR +LD    +L+ IGF + +IGK
Sbjct:  395 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of CN189577 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.700e-13
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = -3
Query:  298 VIVASDAYEATKDSHGVCILTEWDEFKNLDYQKIYNNMQKPAFVFDGRNILD--VEKLRKIGFIVYSIGK 501
            V ++ D YEA   +H + I TEWD FK LDY++I+  M KPAF+FDGR +LD    +L+ IGF + +IGK
Sbjct:  395 VTISKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
The following BLAST results are available for this feature:
BLAST of CN189577 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UGDH_SOYBN3.733e-4782.52UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH1.086e-4679.61Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH2.265e-4478.22Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_DROME7.592e-1654.41UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CAEEL3.768e-1548.15UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
UGDH_PONAB5.441e-1445.45UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN5.441e-1445.45UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_CHICK1.212e-1344.32UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_BOVIN1.212e-1351.43UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_RAT2.700e-1350.00UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B11_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189577 ID=CN189577; Name=CN189577; organism=Citrus sinensis; type=EST; length=569bp
CAAAATTTGCCAGTTTCTGATTTCTTAAACTAATCCAAGTAGTGAACAAC
AAATTCTGATATTCTACTGACATGGGATTACAATATAAAAATTAACAAAC
CACATGATATCAAAACTTGAAGATATGAAATGTAAAAATAAGATATAAAA
ATGATAATTAAAACAAAAATATAGGATGATACTTAAATCTCTCAAATATC
TATTCTAACACTCAACCAAGTCACAAGCCTTGCTTTGTTATGCTATTTCA
GTCTTTTATGCCACAGCAGGCATGTCCTTGAGCCATTTATCCAGTGGCTT
ACCAATGGAGTAAACAATGAACCCAATTTTCCTGAGCTTCTCCACGTCGA
GAATATTCCGACCATCGAAAACAAATGCAGGCTTCTGCATGTTGTTGTAA
ATTTTCTGGTAATCAAGATTTTTGAACTCATCCCACTCGGTCAGAATGCA
AACACCATGAGAATCCTTTGTTGCCTCATAAGCATCTGAGGCAACTATAA
CTTGATTGATTGTTGAAAGACTCGTGGGCTGAAGATGAATTGGATGGTCC
CAATCAAACTTATTCATTT
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