CN189565

Overview
NameCN189565
Unique NameCN189565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length663
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 4.475e-80
Identity = 148/220 (67.27%), Postives = 169/220 (76.82%), Query Frame = 2
Query:    2 RVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 661
            +VPQELVT++G  FE IL+E +KVR+E D D+SI +A SIVF R+PELR                              EGLAH VLQWY+CRMEGWFAADAETIS K WD+EELLPGGHGLMVRGY PVINTLAKGLDIR+GHRVTKI R Y GVKVT E G+TFVADA V+AVPLGVLK+ TIKFEP+LP+WK+ AI+DLGVGIENKII+HF+KVFWP
Sbjct:  130 QVPQELVTQIGVTFERILEEINKVRDEQDADISISQAFSIVFSRKPELRL-----------------------------EGLAHNVLQWYVCRMEGWFAADAETISAKCWDQEELLPGGHGLMVRGYRPVINTLAKGLDIRVGHRVTKIVRRYNGVKVTTENGQTFVADAAVIAVPLGVLKSGTIKFEPKLPEWKQEAINDLGVGIENKIILHFEKVFWP 320          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 6.048e-77
Identity = 147/220 (66.82%), Postives = 163/220 (74.09%), Query Frame = 2
Query:    2 RVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 661
            +V QELVTKVGE FE IL+E  KVR+E DEDMSI +A SIVF R PELR                              EGLAH VLQWYLCRMEGWFAADAETIS K WD+EELLPGGHGLMVRGY PVINTL+KGLDIRL HR+TKI+R Y GVKVT E G TFVADA V+A+PLGVLK+  I FEP+LP WK+ AI+DLGVGIENKII++FD VFWP
Sbjct:  131 QVSQELVTKVGENFEHILEEICKVRDEQDEDMSIAQAFSIVFKRNPELRL-----------------------------EGLAHNVLQWYLCRMEGWFAADAETISAKCWDQEELLPGGHGLMVRGYRPVINTLSKGLDIRLSHRITKISRRYSGVKVTTEKGDTFVADAAVIALPLGVLKSGMITFEPKLPQWKQEAINDLGVGIENKIILNFDNVFWP 321          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 6.492e-63
Identity = 123/221 (55.66%), Postives = 149/221 (67.42%), Query Frame = 2
Query:    2 RVPQELVTKVGEAFESILKETDKVREEHDEDMSIQRAISIVFDRRPELRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIG-VKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFWP 661
            ++P +LVTKVG+AF+ IL+ET+K+R+E   DMS+ + ISIV DR PELR                              EG+A++VLQWYLCRME WFA DA  ISLK WD++E L GGHGLMV+GY PVI T+AK LDIRL HRVTK+ R     V V VEGG  FVADAV++ VP+GVLKA  I+FEP LP WK +AI  LGVG ENKI + FD+ FWP
Sbjct:  131 KIPPQLVTKVGDAFKRILEETEKIRDETANDMSVLQGISIVLDRNPELR-----------------------------QEGMAYEVLQWYLCRMEAWFAVDANLISLKCWDQDECLSGGHGLMVQGYEPVIRTIAKDLDIRLNHRVTKVVRTSNNKVIVAVEGGTNFVADAVIITVPIGVLKANLIQFEPELPQWKTSAISGLGVGNENKIALRFDRAFWP 322          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: LDL2_ORYSJ (Lysine-specific histone demethylase 1 homolog 2 OS=Oryza sativa subsp. japonica GN=Os08g0143400 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20
Identity = 64/193 (33.16%), Postives = 95/193 (49.22%), Query Frame = 2
Query:   92 DMSIQRAISIVFDRRPE--LRFFEHVSSSLPGISXXXXXXXXXXXXXXXXXEGLAHKVLQWYLCRMEGWFAADAETISLKSWDKEEL--LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 658
            DM + R++ +VF+   E   R  E++  +  GIS                      +VL W+L  +E   A     +SL  WD+++   + G H  +  G   +++ L  G+ +     V +I     GV +TVEGG+ F AD  +   PLGVLK+R+I FEP LP+ K  AI  LG G+ NK+ M F  VFW
Sbjct:  257 DMKLDRSMDLVFNTLLEHATRLREYLKKAAEGISLGEGIERLRRFYKVAKSVE-EREVLDWHLANLEFSNAGCLSELSLAHWDQDDQYEMGGDHCFLAGGNARLVHALCDGVPVLYEKTVKRIEHGEDGVSITVEGGQVFKADMALCTAPLGVLKSRSIIFEPELPERKLEAIQRLGFGLLNKVAMVFPHVFW 448          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: LDL2_ARATH (Lysine-specific histone demethylase 1 homolog 2 OS=Arabidopsis thaliana GN=LDL2 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.051e-20
Identity = 58/137 (42.34%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  254 KVLQWYLCRMEGWFAADAETISLKSWDKEEL--LPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 658
            K+  W+L  +E   A     +S   WD+++   + G H  +  G   +IN LA+GL I  G  V  I     GV+V + G + F AD ++  VPLGVLK R+IKFEP LP  K+AAID LG G+ NK+ M F  VFW
Sbjct:  311 KLFDWHLANLEYANAGCLSNLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALAEGLPIIYGKSVDTIKYGDGGVEV-ISGSQIFQADMILCTVPLGVLKKRSIKFEPELPRRKQAAIDRLGFGLLNKVAMLFPSVFW 446          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: LSDA_DROME (Possible lysine-specific histone demethylase 1 OS=Drosophila melanogaster GN=Su(var)3-3 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.361e-18
Identity = 56/152 (36.84%), Postives = 79/152 (51.97%), Query Frame = 2
Query:  257 VLQWYLCRMEGWFAADAETISLKSWDKEELLP--GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKT------FVADAVVVAVPLGVLK----------ARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 658
            +L W+   +E   A     +SLK WD+++     G H  +  GY  V   L + LDIR+   V +I     GV+V  E  KT      + AD VV  + LGVLK          + T+KF+P LPDWK+ AI  LG G  NK+++ FD++FW
Sbjct:  521 ILDWHFANLEFANATRLNNLSLKHWDQDDDFEFIGHHTTVRNGYSCVPVALTENLDIRVNSAVKEIKYGTKGVEVVAENLKTSNSQMTYKADLVVCTLTLGVLKVAVAHKESQQSNTVKFDPPLPDWKQQAIKRLGFGNLNKVVLCFDRIFW 672          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: KDM1_MOUSE (Lysine-specific histone demethylase 1 OS=Mus musculus GN=Kdm1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 53/145 (36.55%), Postives = 82/145 (56.55%), Query Frame = 2
Query:  254 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 658
            ++L W+   +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++     G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++ FD+VFW
Sbjct:  528 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW 672          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: KDM1_HUMAN (Lysine-specific histone demethylase 1 OS=Homo sapiens GN=KDM1 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.085e-17
Identity = 53/145 (36.55%), Postives = 82/145 (56.55%), Query Frame = 2
Query:  254 KVLQWYLCRMEGWFAADAETISLKSWDKEE--LLPGGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKV----TVEGGKTFV--ADAVVVAVPLGVLKAR--TIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 658
            ++L W+   +E   A    T+SLK WD+++     G H  +  GY  V   LA+GLDI+L   V ++     G +V    T    +TF+   DAV+  +PLGVLK +   ++F P LP+WK +A+  +G G  NK+++ FD+VFW
Sbjct:  527 QILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVRYTASGCEVIAVNTRSTSQTFIYKCDAVLCTLPLGVLKQQPPAVQFVPPLPEWKTSAVQRMGFGNLNKVVLCFDRVFW 671          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: KDM1B_MOUSE (Lysine-specific histone demethylase 1B OS=Mus musculus GN=Kdm1B PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.567e-16
Identity = 54/141 (38.30%), Postives = 72/141 (51.06%), Query Frame = 2
Query:  245 LAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRLGHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 658
            L  +VLQ++L  +E    +    +S +SWD  E      G H L+  GY  +I  LA+GLDIRL   V  I      V+VT   G    A  V+V VPL +L+   I+F P L + K  AI+ LG GI  KI + F   FW
Sbjct:  537 LEGQVLQFHLSNLEYACGSSLHQVSARSWDHNEFFAQFAGDHTLLTPGYSTIIEKLAEGLDIRLKSPVQSIDYTGDEVQVTTTDGMGHSAQKVLVTVPLAILQRGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW 677          
BLAST of CN189565 vs. ExPASy Swiss-Prot
Match: KDM1B_HUMAN (Lysine-specific histone demethylase 1B OS=Homo sapiens GN=KDM1B PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 53/142 (37.32%), Postives = 75/142 (52.82%), Query Frame = 2
Query:  245 LAHKVLQWYLCRMEGWFAADAETISLKSWDKEELLP---GGHGLMVRGYLPVINTLAKGLDIRL-GHRVTKITRHYIGVKVTVEGGKTFVADAVVVAVPLGVLKARTIKFEPRLPDWKEAAIDDLGVGIENKIIMHFDKVFW 658
            L  +VLQ++L  +E    ++   +S +SWD  E      G H L+  GY  +I  LA+GLDI+L   +V  I      V+VT   G  + A  V+V VPL +L+   I+F P L + K  AI+ LG GI  KI + F   FW
Sbjct:  531 LEGQVLQFHLSNLEYACGSNLHQVSARSWDHNEFFAQFAGDHTLLTPGYSVIIEKLAEGLDIQLKSPQVQCIDYSGDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQFNPPLSEKKMKAINSLGAGIIEKIALQFPYRFW 672          
The following BLAST results are available for this feature:
BLAST of CN189565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PAO2_ARATH4.475e-8067.27Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH6.048e-7766.82Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
PAO4_ARATH6.492e-6355.66Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
LDL2_ORYSJ1.369e-2033.16Lysine-specific histone demethylase 1 homolog 2 OS... [more]
LDL2_ARATH3.051e-2042.34Lysine-specific histone demethylase 1 homolog 2 OS... [more]
LSDA_DROME6.361e-1836.84Possible lysine-specific histone demethylase 1 OS=... [more]
KDM1_MOUSE1.085e-1736.55Lysine-specific histone demethylase 1 OS=Mus muscu... [more]
KDM1_HUMAN1.085e-1736.55Lysine-specific histone demethylase 1 OS=Homo sapi... [more]
KDM1B_MOUSE1.567e-1638.30Lysine-specific histone demethylase 1B OS=Mus musc... [more]
KDM1B_HUMAN3.859e-1537.32Lysine-specific histone demethylase 1B OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B04_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189565 ID=CN189565; Name=CN189565; organism=Citrus sinensis; type=EST; length=663bp
GAGGGTTCCTCAGGAGTTAGTCACAAAGGTTGGAGAAGCTTTTGAAAGCA
TTTTGAAAGAGACGGACAAAGTAAGAGAAGAACATGATGAAGACATGTCC
ATACAACGCGCCATTTCTATTGTTTTTGATAGGAGGCCAGAATTAAGGTT
CTTTGAGCATGTTTCAAGCTCTCTTCCTGGCATTTCTTTACAGCGAAAGC
TGCTTGATTTATTGAAATTGGTTTTAACATGCAGGTTGGAGGGGCTTGCC
CATAAGGTACTTCAATGGTACTTGTGCAGAATGGAAGGCTGGTTTGCTGC
AGATGCTGAGACAATATCACTTAAATCATGGGATAAGGAAGAGCTGCTTC
CTGGGGGTCATGGGCTTATGGTTCGGGGTTACCTACCGGTTATAAACACC
CTTGCCAAAGGTCTTGACATTCGCTTAGGCCACAGGGTTACTAAAATAAC
AAGGCATTATATTGGAGTGAAGGTAACAGTAGAAGGTGGAAAGACATTTG
TTGCAGATGCTGTTGTTGTTGCTGTTCCTCTTGGTGTGTTGAAGGCGAGA
ACCATCAAGTTTGAACCTAGGCTCCCTGACTGGAAGGAAGCAGCCATTGA
TGACCTTGGTGTGGGCATTGAGAATAAAATAATAATGCATTTCGACAAAG
TGTTTTGGCCAAA
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