CN189564

Overview
NameCN189564
Unique NameCN189564
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:878..1523. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.343e-48
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = -2
Query:  352 GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQPNALDGTYVGGVHPELIL 645
            GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSL QPNALDGTYVGGVHPELIL
Sbjct:  248 GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.453e-43
Identity = 87/98 (88.78%), Postives = 93/98 (94.90%), Query Frame = -2
Query:  352 GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQPNALDGTYVGGVHPELIL 645
            GVK L+SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+L  PNALDG+YVGG+HPELIL
Sbjct:  244 GVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.169e-41
Identity = 84/98 (85.71%), Postives = 90/98 (91.84%), Query Frame = -2
Query:  352 GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQPNALDGTYVGGVHPELIL 645
            GVKRLKSIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+L  PNA+DGT VG + PEL+L
Sbjct:  241 GVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.192e-37
Identity = 79/98 (80.61%), Postives = 87/98 (88.78%), Query Frame = -2
Query:  352 GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQPNALDGTYVGGVHPELIL 645
            GVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+L +PNA+DGT    +  EL++
Sbjct:  247 GVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.528e-37
Identity = 77/87 (88.51%), Postives = 82/87 (94.25%), Query Frame = -2
Query:  385 GVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQPNALDGT 645
            GVKRL+ IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+L +PNA+DGT
Sbjct:  244 GVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.019e-22
Identity = 52/75 (69.33%), Postives = 64/75 (85.33%), Query Frame = -2
Query:  418 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 642
            VKRL S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  239 VKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.014e-20
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = -2
Query:  418 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 642
            VKRL S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  235 VKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 8.580e-20
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = -2
Query:  418 KRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 639
            KRL S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  243 KRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.260e-19
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = -2
Query:  376 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQPNALDGTYVG 642
            VKR+ S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  247 VKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of CN189564 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.760e-18
Identity = 49/88 (55.68%), Postives = 60/88 (68.18%), Query Frame = -2
Query:  379 VKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLAQPNALDGTYV 642
            VKRL S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  241 VKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of CN189564 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
THI4_CITSI3.343e-4898.98Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL1.453e-4388.78Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH5.169e-4185.71Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.192e-3780.61Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE4.528e-3788.51Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH7.019e-2269.33Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX1.014e-2068.00Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR8.580e-2064.86Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA3.260e-1952.81Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO2.760e-1855.68Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189564 ID=CN189564; Name=CN189564; organism=Citrus sinensis; type=EST; length=646bp
TTTTTTATTTTTTTTTTTTTTAAAAGGGAACAGCCCAAGGGCAGTCTTAC
ACATAACACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCTCCG
AAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTAAAG
GTTCCATGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACAACA
TTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACAACT
ACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATGATG
CCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGCTGCAG
CTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCTAATGCA
TTCGGCTGGGCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCCCGA
TATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCATCAATCT
CGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAACCTCCCTGGTC
AGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGTGCCTTCATTCC
AGGCACTTCCTCAATCATTCCGATACTCTTCAACCTCTTTACTCCA
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