CN189562

Overview
NameCN189562
Unique NameCN189562
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13760 contig Csv1_Contig13760:1260..1799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_SPOST (Protein translation factor SUI1 homolog OS=Sporobolus stapfianus PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-31
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -3 
Query:  280 KREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 429
            K+EF  NGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   66 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

HSP 2 Score: 53.9138 bits (128), Expect = 5.055e-31
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            SK+Y H+R+QQRNGRKSLT+VQGLKKEF
Sbjct:   29 SKDYVHVRIQQRNGRKSLTTVQGLKKEF 56

HSP 3 Score: 28.4906 bits (62), Expect = 5.055e-31
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -2 
Query:  425 RG*RKNFSSNKILKDLKK 478
            +G +K FS NKILKDLKK
Sbjct:   50 QGLKKEFSYNKILKDLKK 67
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSJ (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. japonica GN=GOS2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-31
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -3 
Query:  280 KREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 429
            K+EF  NGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   66 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

HSP 2 Score: 53.9138 bits (128), Expect = 5.055e-31
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            SK+Y H+R+QQRNGRKSLT+VQGLKKEF
Sbjct:   29 SKDYVHVRIQQRNGRKSLTTVQGLKKEF 56

HSP 3 Score: 28.4906 bits (62), Expect = 5.055e-31
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -2 
Query:  425 RG*RKNFSSNKILKDLKK 478
            +G +K FS NKILKDLKK
Sbjct:   50 QGLKKEFSYNKILKDLKK 67
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_ORYSI (Protein translation factor SUI1 homolog OS=Oryza sativa subsp. indica GN=GOS2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 5.055e-31
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -3 
Query:  280 KREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 429
            K+EF  NGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   66 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

HSP 2 Score: 53.9138 bits (128), Expect = 5.055e-31
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            SK+Y H+R+QQRNGRKSLT+VQGLKKEF
Sbjct:   29 SKDYVHVRIQQRNGRKSLTTVQGLKKEF 56

HSP 3 Score: 28.4906 bits (62), Expect = 5.055e-31
Identity = 13/18 (72.22%), Postives = 15/18 (83.33%), Query Frame = -2 
Query:  425 RG*RKNFSSNKILKDLKK 478
            +G +K FS NKILKDLKK
Sbjct:   50 QGLKKEFSYNKILKDLKK 67
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_MAIZE (Protein translation factor SUI1 homolog OS=Zea mays GN=TIF PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.439e-30
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = -3 
Query:  280 TKSSRTSKREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 450
            +K  +  K+EF  NGTVVQDPELGQVIQLQGDQRKNVS FLVQAGIVKKEHIK+HGF
Sbjct:   59 SKILKDLKKEFCCNGTVVQDPELGQVIQLQGDQRKNVSNFLVQAGIVKKEHIKIHGF 115

HSP 2 Score: 53.9138 bits (128), Expect = 1.439e-30
Identity = 23/28 (82.14%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            SK+Y H+R+QQRNGRKSLT+VQGLKKEF
Sbjct:   29 SKDYVHVRIQQRNGRKSLTTVQGLKKEF 56

HSP 3 Score: 26.5646 bits (57), Expect = 1.439e-30
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = -2 
Query:  425 RG*RKNFSSNKILKDLKK 478
            +G +K FS +KILKDLKK
Sbjct:   50 QGLKKEFSYSKILKDLKK 67
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_SALBA (Protein translation factor SUI1 homolog OS=Salix bakko PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.319e-29
Identity = 44/50 (88.00%), Postives = 48/50 (96.00%), Query Frame = -3 
Query:  280 KREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 429
            K+EF  NGTVVQDPELGQVIQLQGDQRKNVS+FLVQAGIVKKE+IK+HGF
Sbjct:   64 KKEFCCNGTVVQDPELGQVIQLQGDQRKNVSSFLVQAGIVKKENIKIHGF 113

HSP 2 Score: 50.8322 bits (120), Expect = 3.319e-29
Identity = 21/28 (75.00%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            +K+Y H+RVQQRNGRKSLT+VQGLKK++
Sbjct:   27 TKDYVHVRVQQRNGRKSLTTVQGLKKDY 54

HSP 3 Score: 27.7202 bits (60), Expect = 3.319e-29
Identity = 12/18 (66.67%), Postives = 16/18 (88.89%), Query Frame = -2 
Query:  425 RG*RKNFSSNKILKDLKK 478
            +G +K++S NKILKDLKK
Sbjct:   48 QGLKKDYSYNKILKDLKK 65
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI11_ARATH (Protein translation factor SUI1 homolog 1 OS=Arabidopsis thaliana GN=At4g27130 PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 9.442e-29
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = -3 
Query:  280 TKSSRTSKREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 450
            TK  +  K+EF  NGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   57 TKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

HSP 2 Score: 53.5286 bits (127), Expect = 9.442e-29
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            +KEY HIRVQQRNGRKSLT+VQGLKKE+
Sbjct:   27 TKEYVHIRVQQRNGRKSLTTVQGLKKEY 54

HSP 3 Score: 25.0238 bits (53), Expect = 9.442e-29
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = -2 
Query:  425 RG*RKNFSSNKILKDLKK 478
            +G +K +S  KILKDLKK
Sbjct:   48 QGLKKEYSYTKILKDLKK 65
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI12_ARATH (Protein translation factor SUI1 homolog 2 OS=Arabidopsis thaliana GN=At1g54290 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.068e-28
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = -3 
Query:  280 TKSSRTSKREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 450
            +K  +  K+EF  NGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK++IK+HGF
Sbjct:   57 SKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDNIKIHGF 113

HSP 2 Score: 53.5286 bits (127), Expect = 2.068e-28
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            +KEY HIRVQQRNGRKSLT+VQGLKKE+
Sbjct:   27 TKEYVHIRVQQRNGRKSLTTVQGLKKEY 54

HSP 3 Score: 25.409 bits (54), Expect = 2.068e-28
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = -2 
Query:  425 RG*RKNFSSNKILKDLKK 478
            +G +K +S +KILKDLKK
Sbjct:   48 QGLKKEYSYSKILKDLKK 65
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_BRAOL (Protein translation factor SUI1 homolog OS=Brassica oleracea PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.528e-28
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = -3 
Query:  280 TKSSRTSKREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 450
            TK  +  K+EF  NGTVVQD ELGQVIQLQGDQRKNVSTFLVQAG+VKK+ I++HGF
Sbjct:   57 TKILKDLKKEFCCNGTVVQDSELGQVIQLQGDQRKNVSTFLVQAGLVKKDDIQIHGF 113

HSP 2 Score: 53.5286 bits (127), Expect = 4.528e-28
Identity = 24/28 (85.71%), Postives = 27/28 (96.43%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            +KEY HIRVQQRNGRKSLT+VQGLKKE+
Sbjct:   27 TKEYVHIRVQQRNGRKSLTTVQGLKKEY 54

HSP 3 Score: 25.0238 bits (53), Expect = 4.528e-28
Identity = 11/18 (61.11%), Postives = 14/18 (77.78%), Query Frame = -2 
Query:  425 RG*RKNFSSNKILKDLKK 478
            +G +K +S  KILKDLKK
Sbjct:   48 QGLKKEYSYTKILKDLKK 65
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: SUI1_PIMBR (Protein translation factor SUI1 homolog OS=Pimpinella brachycarpa PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.478e-24
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  280 KREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 429
            K+    NGTVV D ELG+VIQLQGDQRKNVSTF+VQAGIVKK+ IK+H F
Sbjct:   64 KKALCCNGTVVNDKELGKVIQLQGDQRKNVSTFIVQAGIVKKDQIKVHNF 113

HSP 2 Score: 51.9878 bits (123), Expect = 1.478e-24
Identity = 23/27 (85.19%), Postives = 26/27 (96.30%), Query Frame = -1 
Query:  462 SKEYAHIRVQQRNGRKSLTSVQGLKKE 542
            +KEY HIR+QQRNGRKSLT+VQGLKKE
Sbjct:   27 TKEYVHIRIQQRNGRKSLTTVQGLKKE 53

HSP 3 Score: 25.0238 bits (53), Expect = 1.478e-24
Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = -2 
Query:  419 RG*RKNFSSNKILKDLKKGI 478
            +G +K  S +KILKDLKK +
Sbjct:   48 QGLKKELSYDKILKDLKKAL 67
[Close]
BLAST of CN189562 vs. ExPASy Swiss-Prot
Match: EIF1B_PIG (Eukaryotic translation initiation factor 1b OS=Sus scrofa GN=EIF1B PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.546e-19
Identity = 32/56 (57.14%), Postives = 44/56 (78.57%), Query Frame = -3 
Query:  280 KSSRTSKREFRSNGTVVQDPELGQVIQLQGDQRKNVSTFLVQAGIVKKEHIKMHGF 447
            K  +  K++F  NGTV++ PE G+VIQLQGDQRKN+  FL++ GIVK+E +K+HGF
Sbjct:   58 KLVKAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF 113

HSP 2 Score: 42.3578 bits (98), Expect = 2.546e-19
Identity = 16/28 (57.14%), Postives = 25/28 (89.29%), Query Frame = -1 
Query:  459 SKEYAHIRVQQRNGRKSLTSVQGLKKEF 542
            +++Y HIR+QQRNGRK+LT+VQG+  ++
Sbjct:   27 TEDYIHIRIQQRNGRKTLTTVQGIADDY 54
The following BLAST results are available for this feature:
BLAST of CN189562 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
SUI1_SPOST5.055e-3190.00Protein translation factor SUI1 homolog OS=Sporobo... [more]
SUI1_ORYSJ5.055e-3190.00Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_ORYSI5.055e-3190.00Protein translation factor SUI1 homolog OS=Oryza s... [more]
SUI1_MAIZE1.439e-3080.70Protein translation factor SUI1 homolog OS=Zea may... [more]
SUI1_SALBA3.319e-2988.00Protein translation factor SUI1 homolog OS=Salix b... [more]
SUI11_ARATH9.442e-2977.19Protein translation factor SUI1 homolog 1 OS=Arabi... [more]
SUI12_ARATH2.068e-2875.44Protein translation factor SUI1 homolog 2 OS=Arabi... [more]
SUI1_BRAOL4.528e-2875.44Protein translation factor SUI1 homolog OS=Brassic... [more]
SUI1_PIMBR1.478e-2474.00Protein translation factor SUI1 homolog OS=Pimpine... [more]
EIF1B_PIG2.546e-1957.14Eukaryotic translation initiation factor 1b OS=Sus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B02_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189562 ID=CN189562; Name=CN189562; organism=Citrus sinensis; type=EST; length=542bp
TAGATGATAACTTTGGATAATAATTTGTACTTACAACCTATCGAGCAAAC
TATACTGCATCACATAACCATAATCATCCCACATTACATAAAACCGAGAA
CTAGGAAACATCAGTGGCACAAAAACAGATAAAACAATACTAAACCAACA
CAGGAGATGATATAACAGCACCACCACATACAAATTTTTTTTTTTTTAAT
AGTATCAATAGCATGTTCTGCACTGCACTGACGAACGCGGGTCACCAAAT
GTGCAGAAACGGAAGTTGCTGTTTACTTAAAAGCCATGCATTTTGATATG
TTCCTTCTTCACAATCCCAGCCTGAACAAGGAACGTAGATACATTCTTCC
GCTGGTCACCTTGGAGTTGAATGACCTGTCCTAGTTCAGGATCCTGGACC
ACTGTTCCATTGGAGCGAAATTCCCTTTTTGAGGTCCTTGAGGATTTTGT
TGGAACTAAAATTCTTTCTTCAACCCCTGGACAGATGTCAGGCTTTTCCT
ACCATTCCGTTGCTGAACACGGATATGCGCATACTCTTTTGA
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