CN189560

Overview
NameCN189560
Unique NameCN189560
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length512
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9213 contig Csv1_Contig9213:134..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189560 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.480e-23
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = -3 
Query:  361 LSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 510
            LSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA
Sbjct:  445 LSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 494
[Close]
BLAST of CN189560 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.688e-16
Identity = 38/50 (76.00%), Postives = 42/50 (84.00%), Query Frame = -3 
Query:  361 LSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 510
            LSQYGMKHMRS AN+CN GI KE+M EASAQAC  IP+ PWSSL +GFSA
Sbjct:  435 LSQYGMKHMRSFANMCNVGIKKEQMREASAQACVTIPANPWSSLQRGFSA 484
[Close]
BLAST of CN189560 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.004e-15
Identity = 39/50 (78.00%), Postives = 41/50 (82.00%), Query Frame = -3 
Query:  361 LSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 510
            LSQYGMKHMRS ANICN GI  E MAEASAQAC +IP+ PWSSL  GFSA
Sbjct:  444 LSQYGMKHMRSFANICNAGIPNEPMAEASAQACASIPANPWSSLQGGFSA 493
[Close]
BLAST of CN189560 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 4.983e-15
Identity = 35/50 (70.00%), Postives = 43/50 (86.00%), Query Frame = -3 
Query:  361 LSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 510
            LSQYG+KHMRS ANICN GI  E+M EA++QAC  +P+GPWSSL++GFSA
Sbjct:  445 LSQYGIKHMRSFANICNAGIQMEQMEEAASQACTTLPTGPWSSLNRGFSA 494
[Close]
BLAST of CN189560 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.230e-14
Identity = 34/50 (68.00%), Postives = 41/50 (82.00%), Query Frame = -3 
Query:  361 LSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 510
            LSQYG+KHMRS+AN+CN GI   +M EA+ QAC  IP+ PWSSLD+GFSA
Sbjct:  429 LSQYGIKHMRSIANMCNAGIQMRQMEEAAMQACPTIPTSPWSSLDRGFSA 478
The following BLAST results are available for this feature:
BLAST of CN189560 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VPE_CITSI8.480e-23100.00Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPE1_PHAVU7.688e-1676.00Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPE_VICSA1.004e-1578.00Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPEG_ARATH4.983e-1570.00Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPEA_ARATH3.230e-1468.00Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002B01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189560 ID=CN189560; Name=CN189560; organism=Citrus sinensis; type=EST; length=512bp
TTTTTTTTTTTTTTTTAATCCAAATTAGAGCTTTTATTTCAATATTTAGA
GCAACACCACGAAGAGGGTTGAGTTGCACGGTCTACAAATCAGGAACAAA
TATAGCTACATAAGCATAAAATAGCATCGCATACATCCAAAATATATACT
ATCAAATTACAACTGCGGTCTGGCAGGGAAGAGCTTTTAAATATAATAAT
TACAAGGAAGCAATCACCAGCCAAATGAAAATAGACATTGCCATAAATGG
AAGCAATCATCAGCCAAATGAAAATAGATATTGCCATATTGGCGACTATA
ATGAAAACTAACATATTTCAAGACTGGCTTATGATATTCGCACAGTTCTC
GGCTTCTTTATGCACTGAATCCTTTGTCGAGAGAACTCCAAGGACCAGAA
GGAATATTTTCACAGGCTTGTGCTGATGCTTCAGCCATCTTCTCTTTCCC
AATTCCTGTATTACAGATGTTTGCAAGAGAACGCATGTGCTTCATTCCAT
ATTGCGATAGAG
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