CN189548

Overview
NameCN189548
Unique NameCN189548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11919 contig Csv1_Contig11919:820..1541. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: TPT_SPIOL (Triose phosphate/phosphate translocator, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 273.478 bits (698), Expect = 8.114e-73
Identity = 135/163 (82.82%), Postives = 145/163 (88.96%), Query Frame = -2
Query:  233 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKA 721
            FNW GFISAMISN+SFTYRS+YSKKAMTDMDSTNIYAYISIIALFVC+PPAIIVEGPQL+KHG +DAI+KVG+ KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+AFGNKISTQ              YS IKA+MEEEKRQMK+
Sbjct:  241 FNWLGFISAMISNVSFTYRSLYSKKAMTDMDSTNIYAYISIIALFVCLPPAIIVEGPQLMKHGFNDAIAKVGLTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIIAFGNKISTQTAIGTSIAIAGVALYSLIKAKMEEEKRQMKS 403          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: TPT1_BRAOB (Triose phosphate/phosphate translocator, chloroplastic OS=Brassica oleracea var. botrytis GN=TPT PE=2 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.610e-71
Identity = 134/164 (81.71%), Postives = 143/164 (87.20%), Query Frame = -2
Query:  230 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 721
            FNW GFISAMISNISFTYRSI+SKKAMTDMDSTN+YAYISIIALFVC+PPAIIVEGPQL+KHG +DAI+KVGM KFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKRQ K A
Sbjct:  244 FNWLGFISAMISNISFTYRSIFSKKAMTDMDSTNVYAYISIIALFVCLPPAIIVEGPQLLKHGFNDAIAKVGMTKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTGIAIAGVALYSVIKAKIEEEKRQGKTA 407          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: TPT_PEA (Triose phosphate/phosphate translocator, chloroplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.295e-70
Identity = 132/164 (80.49%), Postives = 143/164 (87.20%), Query Frame = -2
Query:  230 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 721
            FNW GFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIAL VCIPPA+I+EGP L+K G +DAI+KVG+VKF+SDLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS+IKAQ+EEEKRQ KAA
Sbjct:  239 FNWLGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALIVCIPPALIIEGPTLLKTGFNDAIAKVGLVKFVSDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIIIFGNKISTQTGIGTGIAIAGVALYSFIKAQIEEEKRQAKAA 402          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: TPT_FLATR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria trinervia GN=TPT PE=2 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.295e-70
Identity = 130/164 (79.27%), Postives = 143/164 (87.20%), Query Frame = -2
Query:  230 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 721
            FNW GFISAMISNISFTYRSIYSKKAMTDMDSTN+YAYISIIAL  CIPPA++ EGPQL+KHG +DAI+KVGM+KFISDLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKR+MK+A
Sbjct:  244 FNWLGFISAMISNISFTYRSIYSKKAMTDMDSTNLYAYISIIALLFCIPPAVLFEGPQLLKHGFNDAIAKVGMIKFISDLFWVGMFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAGVAIYSLIKARIEEEKRRMKSA 407          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: TPT_FLAPR (Triose phosphate/phosphate translocator, chloroplastic OS=Flaveria pringlei GN=TPT PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.097e-69
Identity = 131/164 (79.88%), Postives = 141/164 (85.98%), Query Frame = -2
Query:  230 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 721
            FNW GFISAMISNISFTYRSIYSKKAMTDMDSTN+YAYISII+L  CIPPAII+EGPQL+KHG SDAI+KVGM KFISDLFWVGMFYHLYNQLA NTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS IKA++EEEKR +K+A
Sbjct:  245 FNWLGFISAMISNISFTYRSIYSKKAMTDMDSTNLYAYISIISLLFCIPPAIILEGPQLLKHGFSDAIAKVGMTKFISDLFWVGMFYHLYNQLAINTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTAIGTSIAIAGVAVYSLIKAKIEEEKRGLKSA 408          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: TPT_SOLTU (Triose phosphate/phosphate translocator, chloroplastic OS=Solanum tuberosum GN=TPT PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.443e-69
Identity = 127/164 (77.44%), Postives = 141/164 (85.98%), Query Frame = -2
Query:  230 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKAA 721
            FNW GF SAMISNISFTYRSIYSKKAMTDMDSTN+YAYISIIAL  C+PPAI +EGPQL++HG +DAI+KVG+ KF++DLFWVGMFYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YS+IKA+MEEEKRQ KAA
Sbjct:  251 FNWLGFTSAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIFCLPPAIFIEGPQLLQHGFNDAIAKVGLTKFVTDLFWVGMFYHLYNQVATNTLERVAPLTHAVGNVLKRVFVIGFSIVIFGNKISTQTGIGTCIAIAGVAIYSFIKAKMEEEKRQKKAA 414          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: TPT_MAIZE (Triose phosphate/phosphate translocator, chloroplastic OS=Zea mays GN=TPT PE=1 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.018e-68
Identity = 126/163 (77.30%), Postives = 141/163 (86.50%), Query Frame = -2
Query:  233 FNWTGFISAMISNISFTYRSIYSKKAMTDMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKISTQXXXXXXXXXXXXXAYSYIKAQMEEEKRQMKA 721
            FNWTGFI+AMISNISFTYRSIYSKKAMTDMDSTN+YAYISIIAL VCIPPA+I EGP+L++HG SDAI+KVG+ KF+SDLF VG+FYHLYNQ+ATNTLERVAPLTHAVGNVLKRVFVIGFSI+ FGNKISTQ              YSYIKA++EEEKR+  A
Sbjct:  247 FNWTGFINAMISNISFTYRSIYSKKAMTDMDSTNVYAYISIIALIVCIPPALIFEGPKLMQHGFSDAIAKVGLTKFVSDLFLVGLFYHLYNQIATNTLERVAPLTHAVGNVLKRVFVIGFSIIVFGNKISTQTGIGTSIAIAGVAMYSYIKAKIEEEKRKKSA 409          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: GPT1_ARATH (Glucose-6-phosphate/phosphate translocator 1, chloroplastic OS=Arabidopsis thaliana GN=GPT1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 55/127 (43.31%), Postives = 85/127 (66.93%), Query Frame = -2
Query:  347 FNWTGFISAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAF 721
            FN  GF+ AMISN++F +R+I+SKK M    +   N YA +S+++L +  P AI VEGPQ+   G   A++ VG  +F+  +    +FYHLYNQ++  +L++++PLT +VGN +KR+ VI  SI+ F
Sbjct:  236 FNMIGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLLILTPFAIAVEGPQMWVDGWQTALATVGP-QFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSVGNTMKRISVIVSSIIIF 361          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: GPT2_ARATH (Glucose-6-phosphate/phosphate translocator 2, chloroplastic OS=Arabidopsis thaliana GN=GPT2 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.452e-21
Identity = 56/134 (41.79%), Postives = 89/134 (66.42%), Query Frame = -2
Query:  335 FNWTGFISAMISNISFTYRSIYSKKAMT--DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWV---GMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKI 721
            FN TGF+ AMISN++F +R+I+SKK M    +   N YA +S+++L +  P +I VE PQ+   G  +A+S+VG     + ++WV    +FYHLYNQ++  +L++++PLT ++GN +KR+ VI  SI+ F   I
Sbjct:  236 FNITGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMMSLVILTPFSIAVEVPQMWAAGWQNAVSQVGP----NFVWWVVAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVASIIIFHTPI 365          
BLAST of CN189548 vs. ExPASy Swiss-Prot
Match: TPT2_BRAOB (Triose phosphate/phosphate translocator, non-green plastid, chloroplastic OS=Brassica oleracea var. botrytis GN=NGTPT PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.008e-14
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  332 FNWTGFISAMISNISFTYRSIYSKKAMT----DMDSTNIYAYISIIALFVCIPPAIIVEGPQLIKHGLSDAISKVGMVKFISDLFWVGMFYHLYNQLATNTLERVAPLTHAVGNVLKRVFVIGFSILAFGNKIS 721
            FNW GF+SAM SN++   R++ SKK M      +D+  +++ I++++LF+  P     EG +     +  A   V + +  +      + +H Y Q++   L RV+P+TH+VGN +KRV VI  S++ F   +S
Sbjct:  241 FNWAGFLSAMASNLTNQSRNVLSKKVMVKKDDSLDNITLFSIITLMSLFLMAPVTFFSEGIKFTPSYIQSA--GVNVQQIYTKSLIAALCFHAYQQVSYMILARVSPVTHSVGNCVKRVVVIVSSVIFFKTPVS 372          
The following BLAST results are available for this feature:
BLAST of CN189548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TPT_SPIOL8.114e-7382.82Triose phosphate/phosphate translocator, chloropla... [more]
TPT1_BRAOB2.610e-7181.71Triose phosphate/phosphate translocator, chloropla... [more]
TPT_PEA1.295e-7080.49Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLATR1.295e-7079.27Triose phosphate/phosphate translocator, chloropla... [more]
TPT_FLAPR1.097e-6979.88Triose phosphate/phosphate translocator, chloropla... [more]
TPT_SOLTU2.443e-6977.44Triose phosphate/phosphate translocator, chloropla... [more]
TPT_MAIZE6.018e-6877.30Triose phosphate/phosphate translocator, chloropla... [more]
GPT1_ARATH8.515e-2243.31Glucose-6-phosphate/phosphate translocator 1, chlo... [more]
GPT2_ARATH1.452e-2141.79Glucose-6-phosphate/phosphate translocator 2, chlo... [more]
TPT2_BRAOB1.008e-1432.84Triose phosphate/phosphate translocator, non-green... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189548 ID=CN189548; Name=CN189548; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTAGAGACGGAAGCAAGCGATACATTATTATCAGTCA
ACATGAGCTGATTGCAAATTAGCAAATTGTTTGTACTCTGAATTAAAGAA
AATTTATTGTCAAAAAATAACCTCACAGCCAAAGAAATACACTCAATTTG
TCATTTTGATCTTTGGGGGAAAAAGTAGCACGACTTTACATCGGGACCTT
TCCTCATTCACATGCTTCTTTTCTTCTCATGCTGCTTTCATTTGTCGTTT
CTCTTCTTCCATTTGGGCCTTGATGTAAGAGTAGGCTGCCACTCCAGCAA
TTGCAATGACTGTTCCAATACCAGTTTGGGTTGAGATCTTGTTGCCAAAG
GCCAGGATTGAGAACCCAATCACAAACACACGTTTCAGTACATTGCCAAC
TGCATGAGTAAGAGGTGCAACCCTCTCCAAGGTGTTGGTAGCCAACTGAT
TGTAGAGGTGGTAAAACATCCCCACCCAAAAAAGATCTGAAATGAACTTG
ACCATGCCCACTTTGGAAATTGCATCACTTAAGCCATGCTTAATCAGTTG
AGGTCCCTCAACAATGATGGCTGGTGGAATACAGACAAAGAGCGCAATGA
TGGAAATATAGGCATAAATATTAGTACTGTCCATATCAGTCATGGCTTTC
TTGGAGTAGATACTCCTGTAAGTAAACGATATGTTGGAAATCATAGCACT
AATGAAACCCGTCCAATTGAAC
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