CN189544

Overview
NameCN189544
Unique NameCN189544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2577 contig Csv1_Contig2577:2..780. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189544 vs. ExPASy Swiss-Prot
Match: SYP24_ARATH (Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.683e-31
Identity = 70/145 (48.28%), Postives = 91/145 (62.76%), Query Frame = -3 
Query:  282 NKVKFHVTDASLTEFNLTSNNNLNYKLALNITIRNPNKKIGVHYDRIEARVYYDDKRLTSVPLTPFYQGHKNTSYLNPVFEGQQILL--GGALRDYNKENNAGVFSIDVKLKLKVRFKLGKIKTPKFKPTIECDLKVP--LNSSN 704
            N VKF V DA LT F+L SNNNL Y L+LN++IRN    IG+HYDR EA VYY ++RL +VP+  FY G KNT  L  +FEGQ ++L  G   + +  +   GV+ IDVKL +  R  +  + T   KP + C LK+P  L SSN
Sbjct:    5 NDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQRLGAVPMPLFYLGSKNTMLLRALFEGQTLVLLKGNERKKFEDDQKTGVYRIDVKLSINFRVMVLHLVTWPMKPVVRCHLKIPLALGSSN 149
The following BLAST results are available for this feature:
BLAST of CN189544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SYP24_ARATH8.683e-3148.28Putative syntaxin-24 OS=Arabidopsis thaliana GN=SY... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A13_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189544 ID=CN189544; Name=CN189544; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTTTTTTTTTTTTCAATAACAAACATTATTTATTTACATAAAGGTA
CCAGGTGTAGCCTCAATGAAAAGGAAGCCGTATAATAACAAGACCGTAAA
ATGTATACGCTAAAAAACAAAAGAATATAATAATAAACTCAAAAAAGGAA
AAAAAAAAAAAAACACGAAGACTCGATCAAACAAGAGAATAAGATCATCA
TGATCATCAACAATGATGATCAATTAACTAGAAATCAACATCGCACTTAG
TAGTTTCAAAACGACGGCCAGCAAATCTGCCATTAGAAGAATTCAAAGGA
ACCTTCAGATCACACTCGATCGTGGGCTTGAACTTTGGAGTCTTGATTTT
GCCCAACTTGAACCTAACTTTCAATTTAAGCTTCACGTCGATGCTAAAAA
CTCCGGCATTATTCTCTTTATTATAGTCTCTAAGTGCACCGCCAAGCAGA
ATCTGCTGCCCTTCGAAAACGGGGTTCAAATAGCTGGTGTTTTTGTGTCC
TTGATAAAATGGAGTGAGAGGAACAGATGTTAACCTCTTGTCGTCGTAGT
AAACCCTAGCTTCGATGCGGTCGTAGTGTACGCCGATCTTTTTGTTAGGG
TTTCTGATGGTGATGTTAAGGGCAAGCTTGTAGTTGAGGTTGTTGTTGGA
AGTGAGGTTGAATTCAGTGAGAGAGGCATCGGTGACGTGGAACTTGACCT
TGTTGATGGGGCGGAATATGAGCCATACGATCAAGGCTGCGAGGCCAAGG
ATCAACACGGCGGAGACGATGATTTTGA
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