CN189538

Overview
NameCN189538
Unique NameCN189538
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8275 contig Csv1_Contig8275:447..1220. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DER22_ARATH (Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.553e-72
Identity = 132/153 (86.27%), Postives = 141/153 (92.16%), Query Frame = -2
Query:  315 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD 773
            +TADFLYMLLFGA+ LTG VLIGGMIPYLS SFAKIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAWVDLLGMIAGHAYYFL +VYPRMT RRPLKTPSF+KALFADE VVVARP +VRFA  P +E+HQD
Sbjct:   92 KTADFLYMLLFGASVLTGIVLIGGMIPYLSASFAKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWVDLLGMIAGHAYYFLAEVYPRMTNRRPLKTPSFLKALFADEPVVVARPEDVRFAAAPFDEIHQD 244          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DER21_ARATH (Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 7.215e-70
Identity = 128/153 (83.66%), Postives = 137/153 (89.54%), Query Frame = -2
Query:  315 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPANVRFAPPPAEEVHQD 773
            +T DFLYMLLFGAT LTG VLIGGMIPYLS SF+KIIFLSNSLT MMVYVWSKQNP+IHMSFLGLFTFTAAYLPWVLLGFS+ VGASAW D LGMIAGHAYYFL  VYPRMT RRPLKTPSF+KALFADE VV+ARP +VRFA  P +E+HQD
Sbjct:   92 KTTDFLYMLLFGATVLTGIVLIGGMIPYLSVSFSKIIFLSNSLTFMMVYVWSKQNPYIHMSFLGLFTFTAAYLPWVLLGFSILVGASAWGDFLGMIAGHAYYFLAFVYPRMTDRRPLKTPSFLKALFADEPVVIARPEDVRFAHAPFDEIHQD 244          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DERL2_ORYSJ (Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 PE=2 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 3.352e-67
Identity = 122/139 (87.77%), Postives = 129/139 (92.81%), Query Frame = -2
Query:  357 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 773
            RTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S WVDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVARP N
Sbjct:   92 RTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVARPPN 230          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DER22_MAIZE (Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 9.752e-67
Identity = 121/139 (87.05%), Postives = 129/139 (92.81%), Query Frame = -2
Query:  357 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 773
            RTADF YMLLFGAT LTG VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S WVDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVA+P N
Sbjct:   92 RTADFFYMLLFGATVLTGIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPN 230          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DER21_MAIZE (Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2)

HSP 1 Score: 251.136 bits (640), Expect = 4.840e-66
Identity = 120/139 (86.33%), Postives = 128/139 (92.09%), Query Frame = -2
Query:  357 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKALFADEAVVVARPAN 773
            RTADF YMLLFGAT LT  VLIGGMIPY+SE+FA+I+FLSNSLT MMVYVWSK NPFIHMSFLGLFTFTAAYLPWVLLGFS+ VG+S WVDLLGMIAGH YYFLEDVYPRMTGRRPLKTPSFIKALFAD+ VVVA+P N
Sbjct:   92 RTADFFYMLLFGATVLTSIVLIGGMIPYISETFARILFLSNSLTFMMVYVWSKHNPFIHMSFLGLFTFTAAYLPWVLLGFSILVGSSTWVDLLGMIAGHVYYFLEDVYPRMTGRRPLKTPSFIKALFADDNVVVAQPPN 230          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DERL2_PONAB (Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = -2
Query:  393 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 773
            RTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct:   93 RTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DERL2_HUMAN (Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.245e-29
Identity = 63/128 (49.22%), Postives = 85/128 (66.41%), Query Frame = -2
Query:  393 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 773
            RTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+  GH Y+FLEDV+P   G  R LKTPS +KA+F
Sbjct:   93 RTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDVFPNQPGGIRILKTPSILKAIF 209          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DERL2_DICDI (Probable derlin-2 homolog OS=Dictyostelium discoideum GN=derl2 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.124e-29
Identity = 62/126 (49.21%), Postives = 86/126 (68.25%), Query Frame = -2
Query:  396 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGRRPLKTPSFIKAL 773
            R+AD+L+M +FG+  L    LI     + ++   K++FL+ S+  M++YVWS++NP +H+SFLGLFTF+A YLPWV+L            DLLG +AGHAYYFLED YP ++ RR LKTP F+K L
Sbjct:   92 RSADYLFMWIFGSFLL----LIMDAFLFYTKIVTKVLFLAPSIAFMVIYVWSRRNPNMHISFLGLFTFSAPYLPWVILIMGYLFNHDLTTDLLGAVAGHAYYFLEDAYPLISNRRLLKTPGFLKNL 213          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DERL2_MOUSE (Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 1.054e-28
Identity = 60/128 (46.88%), Postives = 84/128 (65.62%), Query Frame = -2
Query:  393 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYPRMTGR-RPLKTPSFIKALF 773
            RTADF++M LFG   +T           L   F  ++FL  + T+M+VYVWS++NP++ M+F GL  F A +LPWVL+GFS+ +G S  VDLLG+  GH Y+FLED++P   G  R LKTPS ++ +F
Sbjct:   93 RTADFVFMFLFGGFLMT-----------LFGLFVSLVFLGQAFTIMLVYVWSRRNPYVRMNFFGLLNFQAPFLPWVLMGFSLLLGNSIIVDLLGIAVGHIYFFLEDIFPNQPGGIRILKTPSILRTIF 209          
BLAST of CN189538 vs. ExPASy Swiss-Prot
Match: DERL2_CAEEL (Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.798e-28
Identity = 63/128 (49.22%), Postives = 86/128 (67.19%), Query Frame = -2
Query:  393 RTADFLYMLLFGATFLTGTVLIGGMIPYLSESFAKIIFLSNSLTLMMVYVWSKQNPFIHMSFLGLFTFTAAYLPWVLLGFSVFVGASAWVDLLGMIAGHAYYFLEDVYP-RMTGRRPLKTPSFIKALF 773
            R ADF+YM LFGA  +            LS  F +I+FL  + T+M+VY+WS++NP I M+F G+ TFTA YLPWVLL FS+ +G +A VD +G+  GH Y+FLEDV+P +  G+R LKTP ++  LF
Sbjct:   91 RRADFVYMFLFGAVLMI-----------LSGIFVQILFLGQAFTIMLVYIWSRRNPMIQMNFFGVLTFTAPYLPWVLLLFSLLLGNNAVVDFMGIACGHIYFFLEDVFPFQEHGKRFLKTPQWLVYLF 207          
The following BLAST results are available for this feature:
BLAST of CN189538 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
DER22_ARATH1.553e-7286.27Derlin-2.2 OS=Arabidopsis thaliana GN=DER2.2 PE=2 ... [more]
DER21_ARATH7.215e-7083.66Derlin-2.1 OS=Arabidopsis thaliana GN=DER2.1 PE=2 ... [more]
DERL2_ORYSJ3.352e-6787.77Derlin-2 OS=Oryza sativa subsp. japonica GN=DER2 P... [more]
DER22_MAIZE9.752e-6787.05Derlin-2.2 OS=Zea mays GN=DER2.2 PE=2 SV=1[more]
DER21_MAIZE4.840e-6686.33Derlin-2.1 OS=Zea mays GN=DER2.1 PE=2 SV=2[more]
DERL2_PONAB1.245e-2949.22Derlin-2 OS=Pongo abelii GN=DERL2 PE=2 SV=1[more]
DERL2_HUMAN1.245e-2949.22Derlin-2 OS=Homo sapiens GN=DERL2 PE=1 SV=1[more]
DERL2_DICDI2.124e-2949.21Probable derlin-2 homolog OS=Dictyostelium discoid... [more]
DERL2_MOUSE1.054e-2846.88Derlin-2 OS=Mus musculus GN=Derl2 PE=2 SV=2[more]
DERL2_CAEEL1.798e-2849.22Derlin-2 OS=Caenorhabditis elegans GN=der-2 PE=2 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A09_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189538 ID=CN189538; Name=CN189538; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTACTAACTACAATCCTTCATTCCTCTATGTATAGAT
TACAAAACTCATCTTCAAATCCAGACAGATCTAGCAGCAACAGGATATAG
CATATACAAAGTTAAGCTGTAATGTACTTATGACATAAACACCATAATTA
GCTAGTTCACATAAATACTTTCAAGACATGGGTCAACAACACTTTCTGCA
GGTTGCAAGACATGGGTCAACAACACTTTCTGCAGGTCGCAGATTTCCCA
TACAGATCAATACAAACCAAAAGTGAGCCCTCAAGAGAGTCCCATCCCTC
AAAGGTTCTCATTAGTCTTGGTGAACTTCCTCTGCAGGTGGTGGAGCAAA
TCTCACATTTGCAGGCCGTGCTACCACTACAGCCTCATCCGCAAACAGTG
CTTTGATAAAAGATGGTGTTTTTAAGGGCCGGCGACCTGTCATCCTAGGA
TAAACATCTTCGAGAAAATAGTAGGCATGACCGGCTATCATCCCCAGCAA
ATCCACCCAAGCGCTAGCGCCAACGAAGACTGAGAATCCCAAGAGCACCC
ATGGTAAGTAAGCTGCTGTAAATGTAAAAAGGCCCAAAAAACTCATGTGG
ATGAAAGGATTTTGTTTGCTCCATACATAAACCATCATGAGTGTCAATGA
ATTGCTAAGGAAAATGATTTTTGCAAATGATTCTGACAAGTAAGGTATCA
TCCCCCCAATAAGAACAGTGCCGGTTAGAAAAGTGGCTCCAAATAAAAGC
ATGTACAAGAAATCTGCAGTCCTT
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