CN189526

Overview
NameCN189526
Unique NameCN189526
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN189526 vs. ExPASy Swiss-Prot
Match: NYC1_ARATH (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Arabidopsis thaliana GN=NYC1 PE=1 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.110e-43
Identity = 82/94 (87.23%), Postives = 88/94 (93.62%), Query Frame = -3 
Query:  405 GSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 686
            GSGKA+NYLTPPRILLA+VT+WLRRGRWFDDQGRALYAAEADR+RNWAENR R S TDAMEMYTENTWVSVFSLSVVCAFIIL ST  ++FPGT
Sbjct:  403 GSGKAVNYLTPPRILLAIVTSWLRRGRWFDDQGRALYAAEADRLRNWAENRTRLSLTDAMEMYTENTWVSVFSLSVVCAFIILQSTTPSSFPGT 496
[Close]
BLAST of CN189526 vs. ExPASy Swiss-Prot
Match: NYC1_ORYSJ (Probable chlorophyll(ide) b reductase NYC1, chloroplastic OS=Oryza sativa subsp. japonica GN=NYC1 PE=1 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.047e-42
Identity = 84/94 (89.36%), Postives = 90/94 (95.74%), Query Frame = -3 
Query:  405 GSGKAINYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRIRNWAENRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSTGSNTFPGT 686
            GSGKAINYLTPPRILLALVTAW+RRGRWFD++GRA+YAAEADRIRNWAE+RARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSS+G    PGT
Sbjct:  412 GSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSG-GPLPGT 504
The following BLAST results are available for this feature:
BLAST of CN189526 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NYC1_ARATH2.110e-4387.23Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
NYC1_ORYSJ1.047e-4289.36Probable chlorophyll(ide) b reductase NYC1, chloro... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0002A01_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0002A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189526 ID=CN189526; Name=CN189526; organism=Citrus sinensis; type=EST; length=688bp
TTTTTTTTTTTTTTTTTGTCGAGAATATTGATGTCTACTTCATGGGCCTG
AGCCTAACATGTACAATCAGGCCCAAATAAATTAATTAAAATAATGAAAC
TTTTATTACAAAGCTTCTATTCATTCATGGGGTTCATTACAATTTCGTTA
ACGCATTACGTGTTACCACAATAAAAAATTCTTCACTAAATTTTGTATCT
TTTTTTTTTTTTCAAATCTTTACATAAACCTACACTATGACTACGTACGG
GACATACTTTATCCCAAGATGAATGATCTAATAAGATAACTGAACACTTG
CATATATGGTTAAGGGCCTGAAATTGCCCGTGAATTCACGCTAAAAGTGC
CAGCTTCTTGTAGTTCTGACGCTTTCTGGTTGCAACCGAAGGTAAAAAGA
ATCAGGTGCCTGGAAATGTGTTGCTACCTGTGCTGGAGAGGATTATGAAG
GCGCAAACTACGGAAAGGGAGAACACCGATACCCATGTGTTCTCTGTGTA
CATCTCCATTGCATCTGTAAAGGAAAACCGTGCCCGATTTTCAGCCCAGT
TCCGTATCCGGTCTGCTTCTGCAGCATACAATGCCCTTCCCTGGTCATCA
AACCAACGTCCTCGTCGCAGCCATGCAGTGACTAATGCAAGTAGTATCCT
GGGAGGAGTCAAGTAATTTATAGCCTTCCCTGAACCCT
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