DR908750

Overview
NameDR908750
Unique NameDR908750
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_ARATH (Nuclear transport factor 2 OS=Arabidopsis thaliana GN=NTF2 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.538e-38
Identity = 75/119 (63.03%), Postives = 87/119 (73.11%), Query Frame = 2
Query:   71 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNY 427
            + V K FV HYY  FD +R  L+ LYQ  SMLTFEGQK  GV  I  K   LPF QC+H IST+D QP     G+L+FVSG+LQLAGE+H L+FSQMFHL+PTP+GSF V NDIFRLNY
Sbjct:    7 DAVSKAFVEHYYSTFDTNRVGLAGLYQEASMLTFEGQKIQGVQSIVAKLTSLPFQQCKHHISTVDCQPSGPASGMLVFVSGNLQLAGEEHALKFSQMFHLMPTPQGSFYVFNDIFRLNY 125          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_ORYSJ (Nuclear transport factor 2 OS=Oryza sativa subsp. japonica GN=NTF2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.718e-32
Identity = 68/120 (56.67%), Postives = 84/120 (70.00%), Query Frame = 2
Query:   71 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNYG 430
            + V K FV HYY  FD +R +L SLYQ  SMLTFEGQ+F G   I+ K   LPF QC H I+T+D QP    GG+L+FVSGSL+   ++H L+FSQMF L+P   G+F VQND+FRLNYG
Sbjct:    4 DAVAKAFVEHYYRTFDTNRPALVSLYQDGSMLTFEGQQFLGAAAIAGKLGSLPFAQCHHDINTVDCQPSGPQGGMLVFVSGSLRTGPDEHPLKFSQMFQLLPA-GGNFYVQNDMFRLNYG 122          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_CANAL (Nuclear transport factor 2 OS=Candida albicans GN=NTF2 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.766e-23
Identity = 56/117 (47.86%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   77 VGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNY 427
            V   F   YY+ FD+DR+ L +LY+  SMLTFE  +  G  DI  K   LPF +  H IST+D+QP  + G +L+ V+G L +  E +  R+SQ+FHLIP   GS+ V NDIFRLNY
Sbjct:    8 VATEFCNFYYNQFDSDRSQLGNLYRNESMLTFETSQLQGARDIVEKLASLPFQKVAHRISTLDAQPASANGDILVMVTGELLIDEEQNAQRYSQVFHLIP-DNGSYYVFNDIFRLNY 123          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_SCHPO (Nuclear transport factor 2 OS=Schizosaccharomyces pombe GN=ntf2 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 6.709e-23
Identity = 54/114 (47.37%), Postives = 74/114 (64.91%), Query Frame = 2
Query:   89 FVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNYG 430
            F   YY  FD+DR+ LSSLY+  SML+FEG +  G   I  K   LPF + +H IST+D+QP  +TG +++ V+G L L  E    R+SQ+FHL+    G++ V ND+FRLNYG
Sbjct:   11 FTQFYYQTFDSDRSQLSSLYREESMLSFEGAQLQGTKAIVEKLVSLPFQRVQHRISTLDAQPTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV-NNNGNYYVLNDLFRLNYG 123          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_YEAST (Nuclear transport factor 2 OS=Saccharomyces cerevisiae GN=NTF2 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.349e-22
Identity = 53/117 (45.30%), Postives = 73/117 (62.39%), Query Frame = 2
Query:   77 VGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNY 427
            + + F   YY+ FD DR+ L +LY+  SMLTFE  +  G  DI  K   LPF + +H I+T+D+QP    G +L+ ++G L +  E +  RFSQ+FHLIP    S+ V NDIFRLNY
Sbjct:    8 LAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLIP-DGNSYYVFNDIFRLNY 123          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_DEBHA (Nuclear transport factor 2 OS=Debaryomyces hansenii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.679e-22
Identity = 55/117 (47.01%), Postives = 70/117 (59.83%), Query Frame = 2
Query:   77 VGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNY 427
            V   F   YY  FD+DR  L +LY+  SMLTFE  +  G  DI  K   LPF +  H IST+D+QP    G +L+ V+G L +  E +  R+SQ+FHLIP    S+ V NDIFRLNY
Sbjct:    8 VASEFCNFYYQQFDSDRTQLGNLYREQSMLTFETSQLQGAKDIVEKLVSLPFQKVAHRISTLDAQPGSPNGDILVMVTGELIIDDEQNAQRYSQVFHLIP-DGNSYYVFNDIFRLNY 123          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_ASHGO (Nuclear transport factor 2 OS=Ashbya gossypii GN=NTF2 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.418e-22
Identity = 52/117 (44.44%), Postives = 73/117 (62.39%), Query Frame = 2
Query:   77 VGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNY 427
            + + F   YY+ FD DR+ L +LY+  SMLTFE  +  G  DI  K   LPF + +H I+T+D+QP    G +L+ ++G L +  E +  RFSQ+FHL+P    S+ V NDIFRLNY
Sbjct:    8 LAQQFTEFYYNQFDTDRSQLGNLYRDQSMLTFETSQLQGAKDIVEKLVSLPFQKVQHRITTLDAQPASPNGDVLVMITGDLLIDDEQNAQRFSQVFHLMP-EGNSYYVFNDIFRLNY 123          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_KLULA (Nuclear transport factor 2 OS=Kluyveromyces lactis GN=NTF2 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.265e-21
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   77 VGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNY 427
            + + F   YY+ FD+DR  L +LY+  SMLTFE  +  G  DI  K   LPF +  H I+T+D+QP    G +L+ ++G L +  E +  RFSQ+FHL+P    S+ V NDIFRLNY
Sbjct:    8 LAQQFTEFYYNQFDSDRTQLGNLYREQSMLTFETTQLQGAKDIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDEEQNPQRFSQVFHLMP-EGSSYYVYNDIFRLNY 123          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_EMENI (Nuclear transport factor 2 OS=Emericella nidulans GN=ntf2 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.652e-21
Identity = 50/117 (42.74%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   77 VGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNY 427
            + + FV  YY  FD +RA L+ LY+  SMLTFE     GV  I  K   LPF + +H +ST+D+QP    GG+L+ V+G+L +  E + + ++Q F L+P   GS+ V ND+FRL Y
Sbjct:    7 IAQQFVTFYYQTFDGNRAGLAPLYRDHSMLTFETSAIQGVAGIIEKLTSLPFQKVQHQVSTLDAQPSGEHGGILVLVTGALLVDEEKNPMNYTQTFQLMPDGAGSYFVLNDVFRLIY 123          
BLAST of DR908750 vs. ExPASy Swiss-Prot
Match: NTF2_CANGA (Nuclear transport factor 2 OS=Candida glabrata GN=NTF2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.158e-21
Identity = 52/117 (44.44%), Postives = 72/117 (61.54%), Query Frame = 2
Query:   77 VGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNY 427
            + + F   YY+ FD+DR+ L +LY+  SMLTFE  +  G   I  K   LPF +  H I+T+D+QP    G +L+ ++G L +  E +  RFSQ+FHLIP    S+ V NDIFRLNY
Sbjct:    8 LAQQFTEFYYNQFDSDRSQLGNLYRDESMLTFETSQLQGAKSIVEKLVSLPFQKVAHRITTLDAQPASPNGDVLVMITGDLLIDDEQNPQRFSQVFHLIP-DGNSYYVFNDIFRLNY 123          
The following BLAST results are available for this feature:
BLAST of DR908750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
NTF2_ARATH2.538e-3863.03Nuclear transport factor 2 OS=Arabidopsis thaliana... [more]
NTF2_ORYSJ2.718e-3256.67Nuclear transport factor 2 OS=Oryza sativa subsp. ... [more]
NTF2_CANAL1.766e-2347.86Nuclear transport factor 2 OS=Candida albicans GN=... [more]
NTF2_SCHPO6.709e-2347.37Nuclear transport factor 2 OS=Schizosaccharomyces ... [more]
NTF2_YEAST4.349e-2245.30Nuclear transport factor 2 OS=Saccharomyces cerevi... [more]
NTF2_DEBHA5.679e-2247.01Nuclear transport factor 2 OS=Debaryomyces hanseni... [more]
NTF2_ASHGO7.418e-2244.44Nuclear transport factor 2 OS=Ashbya gossypii GN=N... [more]
NTF2_KLULA1.265e-2144.44Nuclear transport factor 2 OS=Kluyveromyces lactis... [more]
NTF2_EMENI1.652e-2142.74Nuclear transport factor 2 OS=Emericella nidulans ... [more]
NTF2_CANGA2.158e-2144.44Nuclear transport factor 2 OS=Candida glabrata GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16878 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_C03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908750 ID=DR908750; Name=DR908750; organism=Citrus sinensis; type=EST; length=585bp
ATTTGAGGGGCTGGTGGAGACTACCGACGAAGGGGAGTTGGAAAGAAAAG
AGAGAATGGAAGATCAGACTGAATTGGTGGGAAAGACATTTGTGGGTCAT
TACTACCACCTCTTTGACAACGATAGAGCTTCCCTTTCTTCTCTCTATCA
ACCAACTTCCATGCTCACATTTGAAGGCCAAAAATTTTTTGGAGTTGATG
ATATCTCTACCAAGTTTAACCAGCTACCGTTCGATCAATGCCGACACATG
ATCAGCACCATTGATTCCCAGCCCTGTCCATCCACCGGCGGCTTACTTAT
CTTTGTCAGCGGCAGCCTTCAGTTGGCCGGAGAGGACCACCACTTGAGAT
TCAGCCAGATGTTCCACCTGATTCCAACGCCGCGGGGAAGCTTCGCTGTT
CAGAATGACATATTTCGCCTTAATTATGGTTGAATATTTATTTACTTCTC
CTTAATTCAGATTGTCAACAGTCCTGGTGCTGCGTGATGTGTTCCATCAA
CACATACTGTTATTGTAATCCCCCGGGCCGGGCCGGGCCATATTATGAAC
CAATTAATTTGCTCATTTTATTTTCAAAAAAAAAA
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