CN189511

Overview
NameCN189511
Unique NameCN189511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189511_ssr3 microsatellite CN189511_ssr3:3..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7095 contig Csv1_Contig7095:191..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: E1312_ARATH (Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis thaliana GN=At4g29360 PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.298e-50
Identity = 103/223 (46.19%), Postives = 143/223 (64.13%), Query Frame = 2
Query:   50 KVGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVF 718
            K+GI YGR A+NLPSP +V EL++   I  V+ YD +  VL A AN+ I +++  PN +L   A  QS  D W+  NI  YYP+TKI +++VG EV   P N T  ++PAM+N++ +L K  LD  +K+SS  +L  L  S+PPSS SF S      LKPMLEFL +  S  M++ YP++AY  + +K+ L+YALF  +   VD   GL YSN+FDAQLDA++
Sbjct:   26 KIGICYGRNADNLPSPNRVSELIQHLNIKFVRIYDANIDVLKAFANTGIELMIGVPNADLLAFAQFQSNVDTWLSNNILPYYPSTKITSISVGLEVTEAPDNATGLVLPAMRNIHTALKKSGLDKKIKISSSHSLAILSRSFPPSSASF-SKKHSAFLKPMLEFLVENESPFMIDLYPYYAYRDSTEKVPLEYALFESSSQVVDPATGLLYSNMFDAQLDAIY 247          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: E1313_ARATH (Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.752e-49
Identity = 98/234 (41.88%), Postives = 147/234 (62.82%), Query Frame = 2
Query:   20 LVTFASAHTGKVGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPK-NTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVF 718
            L+     + GKVG+ YGR A++LP+P KVV+L++   I  V+ YD +S VL A  N+ I +++  PN +L+  +  QS  D W++ ++  YYP TKI  + VG E   DP  N + F+VPAM+NV  +L K  L   +KVS+ ++LG L  S+PPS+G+F S      L+PMLEFL +  S  M++ YP++AY  + + +SLDY LF  +   +D   GL Y N+FDAQ+DA++
Sbjct:   15 LLLLDCCYGGKVGVCYGRSADDLPTPSKVVQLIQQHNIKYVRIYDYNSQVLKAFGNTSIELMIGVPNSDLNAFSQSQSNVDTWLKNSVLPYYPTTKITYITVGAESTDDPHINASSFVVPAMQNVLTALRKVGLSRRIKVSTTLSLGILSRSFPPSAGAFNSSYAY-FLRPMLEFLAENKSPFMIDLYPYYAYRDSPNNVSLDYVLFESSSEVIDPNTGLLYKNMFDAQVDALY 247          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: EA6_ARATH (Probable glucan endo-1,3-beta-glucosidase A6 OS=Arabidopsis thaliana GN=A6 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.529e-47
Identity = 92/223 (41.26%), Postives = 143/223 (64.13%), Query Frame = 2
Query:   50 KVGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAV 715
            K+GINYGR  NNLPSP + +  +KS   G VK YD D   L  L+ +++ V +  PN +++  +++Q+  D WV+ NI  YYP T+I  V VGNE+ + +  N +  LVPAM+ + NSL  + +  N+KV +P+A+ +L++S+PPS+G+F+ ++  P + P+L+FL  T+SY  +N +P+F +S N    SLD+ALF+ +    D   GL Y NL D  LD+V
Sbjct:   41 KIGINYGRRGNNLPSPYQSINFIKSIKAGHVKLYDADPESLTLLSQTNLYVTITVPNHQITALSSNQTIADEWVRTNILPYYPQTQIRFVLVGNEILSYNSGNVSVNLVPAMRKIVNSLRLHGI-HNIKVGTPLAMDSLRSSFPPSNGTFREEITGPVMLPLLKFLNGTNSYFFLNVHPYFRWSRNPMNTSLDFALFQGHSTYTDPQTGLVYRNLLDQMLDSV 262          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: E1311_ARATH (Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis thaliana GN=At1g32860 PE=1 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.529e-47
Identity = 93/226 (41.15%), Postives = 145/226 (64.16%), Query Frame = 2
Query:   44 TGKVGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFA-DPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVF 718
            T  +G+NYG++ +NLPSP  V+ L+KS G  +VK YD +  +L A +N+ I  ++   NE LSK   D S    W++ N++ + PAT I  + +GNE+ A +  + T  L+PAM+ V+++L+   L   + V++  +L  L++S+PPS+G F+ DL++ +L P+LEF RKT S  ++NAYPFFAY  N  ++ LD+ LF+ N G VD   G  Y N+  AQ+DAV+
Sbjct:   26 TTSIGVNYGQIGDNLPSPTDVIPLIKSIGATKVKLYDANPQILKAFSNTGIEFIIGLGNEYLSKMK-DPSKALTWIKQNVTPFLPATNITCITIGNEILALNDSSLTTNLLPAMQGVHSALITAGLSDQISVTTAHSLSILKSSFPPSAGEFQPDLLD-SLTPILEFHRKTDSPFLINAYPFFAYKGNPKEVPLDFVLFQPNQGIVDPATGFHYDNMLFAQIDAVY 249          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: GUB_NICPL (Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 1.690e-46
Identity = 97/224 (43.30%), Postives = 142/224 (63.39%), Query Frame = 2
Query:   53 VGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV--FADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVF 718
            VG+ YG + NNLP   +VV+L KS+ I R++ YD + A L AL  S+I V++  PN +L   AA+ S  +NWVQ N+  ++PA K   +AVGNEV       + T +L+PAM+N+ N++    L +N+KVSS + +  + NS+PPS GSF++D +   + P++ F+R+ +S L+VN YP+F+Y+ N   ISL YALF   P  V     L Y NLFDA  DAV+
Sbjct:   33 VGVCYGMLGNNLPPASQVVQLYKSKNIRRMRLYDPNQAALQALRGSNIEVMLGVPNSDLQNIAANPSNANNWVQRNVRNFWPAVKFRYIAVGNEVSPVTGTSSLTRYLLPAMRNIRNAISSAGLQNNIKVSSSVDMTLIGNSFPPSQGSFRND-VRSFIDPIIGFVRRINSPLLVNIYPYFSYAGNPRDISLPYALF-TAPNVVVQDGSLGYRNLFDAMSDAVY 254          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: E1310_ARATH (Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis thaliana GN=At5g42100 PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 6.423e-46
Identity = 99/223 (44.39%), Postives = 139/223 (62.33%), Query Frame = 2
Query:   53 VGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVF 718
            +GINYG+VANNLP P+ V+ LLKS G  +VK YD D   L A A S   + VA  NE L++ + D      WV+ N+  Y P TKI A+ VGNEV    ++  T  L PAM++++ +LV   L+  + V++  +L  L  SYPPS+ SF+ DL+  +L P+L+F  KT S +++NAYPFFAY  N   +SLD+ LF+ N G  D G+   Y N+  AQ+DAV+
Sbjct:   27 IGINYGQVANNLPPPKNVIPLLKSVGATKVKLYDADPQALRAFAGSGFELTVALGNEYLAQMS-DPIKAQGWVKENVQAYLPNTKIVAIVVGNEVLTSNQSALTAALFPAMQSIHGALVDCGLNKQIFVTTAHSLAILDVSYPPSATSFRRDLLG-SLTPILDFHVKTGSPILINAYPFFAYEENPKHVSLDFVLFQPNQGFTDPGSNFHYDNMLFAQVDAVY 247          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: E1314_ARATH (Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis thaliana GN=At2g27500/F10A12.18 PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.096e-45
Identity = 94/223 (42.15%), Postives = 137/223 (61.43%), Query Frame = 2
Query:   53 VGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNT-TPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVF 718
            VGINYG++ANNLPSP +V  LL+S  I RVK YD D  VL + +NS +  ++   NE L   + D +   +W+Q  +  +   T+I ++ VGNE+F    +     L+PAMK+VY +L    L+  V V+S  +L  L  SYPPSSGSFK + I+  L+P+L+F  +  S  ++NAYPFFAY  +  ++ L+Y LF+ N G VD    L Y N+  AQ+DA++
Sbjct:   29 VGINYGQIANNLPSPARVAVLLRSLNITRVKLYDADPNVLFSFSNSQVDFMIGLGNEYLQNMSTDPTKAQDWLQQRLEPHISKTRITSIVVGNEIFKTNDHVLIQSLLPAMKSVYAALTNLGLEKQVTVTSAHSLDILSTSYPPSSGSFKEEFIQ-YLQPLLDFHSQIESPFLINAYPFFAYKDSPKEVPLEYVLFQPNQGMVDPNTNLHYDNMLFAQVDALY 250          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: E137_ARATH (Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis thaliana GN=At4g34480 PE=1 SV=2)

HSP 1 Score: 181.8 bits (460), Expect = 3.188e-45
Identity = 94/231 (40.69%), Postives = 145/231 (62.77%), Query Frame = 2
Query:   29 FASAHTGK-VGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEV-FADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAV 715
            F S+H    +G+NYG+VA+NLP P + V+LL+S  I +V+ Y  D A++ ALA + + +V+   N ++   A+D +    W+ +N+  +YPA+KI  + VGNE+  ++  N    L+PAM+NV  +L    L   +KVS+  ++  L +S PPSSGSF +   +  LK +L+FL  T S   +N YPFFAY ++    +L + LF  N G+VDS  G+KY+N+FDAQ+DAV
Sbjct:   17 FPSSHAEPFIGVNYGQVADNLPPPSETVKLLQSTSIQKVRLYGADPAIIKALAGTGVGIVIGAANGDVPSLASDPNAATQWINSNVLPFYPASKIMLITVGNEILMSNDPNLVNQLLPAMQNVQKALEAVSLGGKIKVSTVNSMTVLGSSDPPSSGSFAAG-YQTGLKGILQFLSDTGSPFAINPYPFFAYQSDPRPETLAFCLFEPNAGRVDSKTGIKYTNMFDAQVDAV 246          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: E132_ARATH (Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis thaliana GN=At1g66250 PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.211e-44
Identity = 92/225 (40.89%), Postives = 137/225 (60.89%), Query Frame = 2
Query:   53 VGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFR---DNPGQVDSGNGLKYSNLFDAQLDAVF 718
            +G+N G   +++P P +VV LLK+Q I  ++ Y+ D  +L ALAN+ I V+++ PN++L       S   NWV+ N+  +YPAT I AV+VG+EV     N  P LV A+KNV+ +L+   LD  +KVS+P++   + + +PPS   F   L    + P+L FL+ T+SYLMVN YP+  Y  +   I LDYALF+    N   VD+   ++YSN FDA +DA +
Sbjct:   32 IGVNIGTDLSDMPHPTQVVALLKAQEIRHIRLYNADPGLLIALANTGIKVIISIPNDQLLGIGQSNSTAANWVKRNVIAHYPATMITAVSVGSEVLTSLSNAAPVLVSAIKNVHAALLSANLDKLIKVSTPLSTSLILDPFPPSQAFFNRSL-NAVIVPLLSFLQSTNSYLMVNVYPYIDYMQSNGVIPLDYALFKPIPPNKEAVDANTLVRYSNAFDAMVDATY 255          
BLAST of CN189511 vs. ExPASy Swiss-Prot
Match: E13A_SOYBN (Glucan endo-1,3-beta-glucosidase OS=Glycine max PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.603e-44
Identity = 99/233 (42.49%), Postives = 137/233 (58.80%), Query Frame = 2
Query:   20 LVTFASAHTGKVGINYGRVANNLPSPEKVVELLKSQGIGRVKTYDTDSAVLAALANSDISVVVAFPNEELSKAAADQSFTDNWVQANISKYYPATKIEAVAVGNEVFADPKNTTPFLVPAMKNVYNSLVKYKLDSNVKVSSPIALGALQNSYPPSSGSFKSDLIEPALKPMLEFLRKTSSYLMVNAYPFFAYSANADKISLDYALFRDNPGQVDSGNGLKYSNLFDAQLDAVF 718
            L+T+      + G+ YGR+ NNLP+P++VV L     I R++ Y     VL AL  S+I +++  PN+ L   A+ Q   + WVQ NI  Y    +   V+VGNEV  +  +   FLVPA++N+  ++    L + VKVS+ I  GAL  S+PPS GSFKSD     L  ++ FL   ++ LMVN Y +FAY+AN   ISLDYALFR +P  V     L Y NLFDA +DAV+
Sbjct:   23 LITYTGTTDAQSGVCYGRLGNNLPTPQEVVALYNQANIRRMRIYGPSPEVLEALRGSNIELLLDIPNDNLRNLASSQDNANKWVQDNIKNYANNVRFRYVSVGNEVKPE-HSFAQFLVPALENIQRAISNAGLGNQVKVSTAIDTGALAESFPPSKGSFKSDYRGAYLDGVIRFLVNNNAPLMVNVYSYFAYTANPKDISLDYALFR-SPSVVVQDGSLGYRNLFDASVDAVY 253          
The following BLAST results are available for this feature:
BLAST of CN189511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
E1312_ARATH4.298e-5046.19Glucan endo-1,3-beta-glucosidase 12 OS=Arabidopsis... [more]
E1313_ARATH4.752e-4941.88Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis... [more]
EA6_ARATH1.529e-4741.26Probable glucan endo-1,3-beta-glucosidase A6 OS=Ar... [more]
E1311_ARATH1.529e-4741.15Glucan endo-1,3-beta-glucosidase 11 OS=Arabidopsis... [more]
GUB_NICPL1.690e-4643.30Lichenase OS=Nicotiana plumbaginifolia GN=GN1 PE=2... [more]
E1310_ARATH6.423e-4644.39Glucan endo-1,3-beta-glucosidase 10 OS=Arabidopsis... [more]
E1314_ARATH1.096e-4542.15Glucan endo-1,3-beta-glucosidase 14 OS=Arabidopsis... [more]
E137_ARATH3.188e-4540.69Glucan endo-1,3-beta-glucosidase 7 OS=Arabidopsis ... [more]
E132_ARATH1.211e-4440.89Glucan endo-1,3-beta-glucosidase 2 OS=Arabidopsis ... [more]
E13A_SOYBN4.603e-4442.49Glucan endo-1,3-beta-glucosidase OS=Glycine max PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001P17_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189511 ID=CN189511; Name=CN189511; organism=Citrus sinensis; type=EST; length=720bp
AGTCTTCTTCTTCTTCTTCCTCGTAACCTTCGCTTCTGCACATACTGGCA
AGGTAGGTATAAATTACGGCAGAGTTGCAAACAACTTACCGTCGCCGGAG
AAAGTTGTGGAGCTGCTGAAATCTCAAGGAATCGGCCGAGTTAAAACATA
CGACACTGACTCAGCCGTACTCGCTGCACTCGCGAACTCGGACATAAGCG
TCGTCGTTGCGTTCCCGAATGAGGAACTCTCCAAGGCCGCAGCTGACCAG
TCATTTACTGACAACTGGGTCCAGGCCAATATCTCCAAGTACTACCCGGC
AACGAAGATCGAGGCCGTCGCCGTGGGCAACGAAGTCTTCGCAGACCCGA
AGAACACGACGCCGTTTCTCGTCCCCGCCATGAAGAACGTTTACAACTCC
TTGGTTAAGTACAAGCTTGATTCTAACGTTAAAGTCTCCTCTCCTATTGC
TTTAGGTGCGTTACAAAATTCGTACCCGCCATCTTCCGGGTCGTTCAAAT
CGGATCTCATCGAGCCCGCTTTGAAACCCATGTTGGAGTTTCTACGTAAG
ACGTCGTCGTATCTCATGGTTAATGCGTATCCTTTTTTCGCCTACTCTGC
TAACGCGGATAAGATATCTTTAGACTACGCTCTGTTTAGGGATAATCCCG
GTCAGGTGGATTCAGGTAACGGGCTGAAGTATAGTAACCTTTTTGACGCC
CAACTCGACGCCGTTTTCGC
back to top