DR908739

Overview
NameDR908739
Unique NameDR908739
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_TAKRU (Structural maintenance of chromosomes protein 6 OS=Takifugu rubripes GN=smc6 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 5.956e-16
Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1
Query:   73 LTSKLQACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405
            L + ++     +D R   +      L  +  + F+  L ++G +G +  +++ +TLSI V+ P   + +++ D R LSGGERSFST+CF L+L  +TEAPFR +DEFDV+M
Sbjct:  917 LNNFIKCLDRVMDQRLYAYTVLRRFLSARCKYYFDSMLAQRGFTGNMTFDHKNETLSISVQ-PGQGNKADLNDMRCLSGGERSFSTVCFVLSLWPITEAPFRCLDEFDVYM 1026          

HSP 2 Score: 21.1718 bits (43), Expect = 5.956e-16
Identity = 10/27 (37.04%), Postives = 15/27 (55.56%), Query Frame = 2
Query:  470 QWIFITPHDVSLVKQGERIQKQQMAAP 550
            Q IF+TP  +S + +  RI   Q+  P
Sbjct: 1050 QLIFLTPQSMSSLPECRRIHIVQLNDP 1076          
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_DICDI (Structural maintenance of chromosomes protein 6 OS=Dictyostelium discoideum GN=smc6 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  106 LDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKM----PQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405
            L+ R+ K+QR    + R+    FN  L KKG +G +  +++   L I V++    P + + +   DT+GLSGGERSFST+   LA  E  E PFRAMDEFDVFM
Sbjct: 1021 LNERYKKWQRFRLSISRRSDQYFNIFLSKKGYTGSLTFDHQNGKLDINVELQKALPSNQNGTAKGDTKGLSGGERSFSTVSLLLAFWENMECPFRAMDEFDVFM 1124          
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_MOUSE (Structural maintenance of chromosomes protein 6 OS=Mus musculus GN=Smc6 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15
Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 1
Query:   85 LQACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405
            ++   E +  R+  +Q+    L  +    F+  L ++   GK+N +++ +TLSI V+ P + + ++  D R LSGGERSFST+CF L+L  + E+PFR +DEFDV+M
Sbjct:  922 IKLLEEIMTHRYKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSITVQ-PGEGNKASFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYM 1027          
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_HUMAN (Structural maintenance of chromosomes protein 6 OS=Homo sapiens GN=SMC6 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.339e-15
Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1
Query:  100 EALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405
            E ++ R+  +Q+    L  +    F+  L ++   GK+N +++ +TLSI V+ P + + +   D R LSGGERSFST+CF L+L  + E+PFR +DEFDV+M
Sbjct:  921 EIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSISVQ-PGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYM 1021          
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_XENLA (Structural maintenance of chromosomes protein 6 OS=Xenopus laevis GN=smc6 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.055e-15
Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 1
Query:  100 EALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405
            E +  R+  +Q+    L  +    F+  L ++  SGKIN +++ +TLSI V+ P + + + + D + LSGGERSFST+CF L+L  + E+PFR +DEFDV+M
Sbjct:  959 EIMAQRYKSYQQFRRCLTFRCKIYFDSLLSQRAYSGKINFDHKNETLSITVQ-PGEGNKAALSDMKCLSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYM 1059          
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_SCHPO (Structural maintenance of chromosomes protein 6 OS=Schizosaccharomyces pombe GN=smc6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11
Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 1
Query:   73 LTSKLQACREALDSR---WGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRD--------TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405
            LT  LQA  E L  R   W KF++  TL  ++L   F  +L ++  +GK+ I ++E+ L   V  P + + +   +         +GLSGGE+SF+T+C  L++ E    P R +DEFDVFM
Sbjct:  961 LTQLLQALEETLRRRNEMWTKFRKLITLRTKEL---FELYLSQRNFTGKLVIKHQEEFLEPRV-YPANRNLATAHNRHEKSKVSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFM 1078          
The following BLAST results are available for this feature:
BLAST of DR908739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
SMC6_TAKRU5.956e-1637.84Structural maintenance of chromosomes protein 6 OS... [more]
SMC6_DICDI6.155e-1644.23Structural maintenance of chromosomes protein 6 OS... [more]
SMC6_MOUSE1.791e-1538.32Structural maintenance of chromosomes protein 6 OS... [more]
SMC6_HUMAN2.339e-1540.20Structural maintenance of chromosomes protein 6 OS... [more]
SMC6_XENLA3.055e-1541.18Structural maintenance of chromosomes protein 6 OS... [more]
SMC6_SCHPO1.201e-1136.07Structural maintenance of chromosomes protein 6 OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16867 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_C12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908739 ID=DR908739; Name=DR908739; organism=Citrus sinensis; type=EST; length=586bp
CTCACACTATCCCATGCCACAACACCCCCCCCCCCTCCCGCGACAACACA
CACAAAAAAGCACCATTCTCCTCTGACTTCTAAATTGCAGGCTTGTCGAG
AAGCGCTGGACTCGCGATGGGGCAAGTTTCAAAGAAATGCTACTCTTTTG
AAGCGTCAGTTGACTTGGCAATTTAATGGCCATCTGGGAAAGAAGGGGAT
TAGCGGGAAAATTAATATTAACTATGAGGAAAAGACTCTCTCCATTGAGG
TAAAGATGCCCCAAGATGCATCAAGCAGCAATGTTCGTGACACGAGGGGA
CTTTCAGGTGGGGAGCGCTCATTTTCAACATTATGCTTTGCATTGGCTCT
TCACGAAATGACAGAAGCTCCATTTCGAGCAATGGACGAGTTTGATGTGT
TCATGGGATGCAATTAGCCGGAAAATAAGCTTAGATACATTAGTGGATTT
TGCTTTGGCACAAGGATCCCAGTGGATATTTATCACCCCTCATGATGTCA
GTTTAGTGAAACAAGGAGAGAGGATCCAGAAACAGCAGATGGCAGCTCCT
CGTCCTTGATCTTATTCGTCTACAGCTTTTGCTTGC
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