DR908739
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_TAKRU (Structural maintenance of chromosomes protein 6 OS=Takifugu rubripes GN=smc6 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 5.956e-16 Identity = 42/111 (37.84%), Postives = 68/111 (61.26%), Query Frame = 1 Query: 73 LTSKLQACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405 L + ++ +D R + L + + F+ L ++G +G + +++ +TLSI V+ P + +++ D R LSGGERSFST+CF L+L +TEAPFR +DEFDV+M Sbjct: 917 LNNFIKCLDRVMDQRLYAYTVLRRFLSARCKYYFDSMLAQRGFTGNMTFDHKNETLSISVQ-PGQGNKADLNDMRCLSGGERSFSTVCFVLSLWPITEAPFRCLDEFDVYM 1026 HSP 2 Score: 21.1718 bits (43), Expect = 5.956e-16 Identity = 10/27 (37.04%), Postives = 15/27 (55.56%), Query Frame = 2 Query: 470 QWIFITPHDVSLVKQGERIQKQQMAAP 550 Q IF+TP +S + + RI Q+ P Sbjct: 1050 QLIFLTPQSMSSLPECRRIHIVQLNDP 1076
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_DICDI (Structural maintenance of chromosomes protein 6 OS=Dictyostelium discoideum GN=smc6 PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16 Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1 Query: 106 LDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKM----PQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405 L+ R+ K+QR + R+ FN L KKG +G + +++ L I V++ P + + + DT+GLSGGERSFST+ LA E E PFRAMDEFDVFM Sbjct: 1021 LNERYKKWQRFRLSISRRSDQYFNIFLSKKGYTGSLTFDHQNGKLDINVELQKALPSNQNGTAKGDTKGLSGGERSFSTVSLLLAFWENMECPFRAMDEFDVFM 1124
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_MOUSE (Structural maintenance of chromosomes protein 6 OS=Mus musculus GN=Smc6 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.791e-15 Identity = 41/107 (38.32%), Postives = 67/107 (62.62%), Query Frame = 1 Query: 85 LQACREALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405 ++ E + R+ +Q+ L + F+ L ++ GK+N +++ +TLSI V+ P + + ++ D R LSGGERSFST+CF L+L + E+PFR +DEFDV+M Sbjct: 922 IKLLEEIMTHRYKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSITVQ-PGEGNKASFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYM 1027
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_HUMAN (Structural maintenance of chromosomes protein 6 OS=Homo sapiens GN=SMC6 PE=1 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 2.339e-15 Identity = 41/102 (40.20%), Postives = 65/102 (63.73%), Query Frame = 1 Query: 100 EALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405 E ++ R+ +Q+ L + F+ L ++ GK+N +++ +TLSI V+ P + + + D R LSGGERSFST+CF L+L + E+PFR +DEFDV+M Sbjct: 921 EIMEHRFKTYQQFRRCLTLRCKLYFDNLLSQRAYCGKMNFDHKNETLSISVQ-PGEGNKAAFNDMRALSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYM 1021
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_XENLA (Structural maintenance of chromosomes protein 6 OS=Xenopus laevis GN=smc6 PE=2 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.055e-15 Identity = 42/102 (41.18%), Postives = 66/102 (64.71%), Query Frame = 1 Query: 100 EALDSRWGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRDTRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405 E + R+ +Q+ L + F+ L ++ SGKIN +++ +TLSI V+ P + + + + D + LSGGERSFST+CF L+L + E+PFR +DEFDV+M Sbjct: 959 EIMAQRYKSYQQFRRCLTFRCKIYFDSLLSQRAYSGKINFDHKNETLSITVQ-PGEGNKAALSDMKCLSGGERSFSTVCFILSLWSIAESPFRCLDEFDVYM 1059
BLAST of DR908739 vs. ExPASy Swiss-Prot
Match: SMC6_SCHPO (Structural maintenance of chromosomes protein 6 OS=Schizosaccharomyces pombe GN=smc6 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.201e-11 Identity = 44/122 (36.07%), Postives = 67/122 (54.92%), Query Frame = 1 Query: 73 LTSKLQACREALDSR---WGKFQRNATLLKRQLTWQFNGHLGKKGISGKININYEEKTLSIEVKMPQDASSSNVRD--------TRGLSGGERSFSTLCFALALHEMTEAPFRAMDEFDVFM 405 LT LQA E L R W KF++ TL ++L F +L ++ +GK+ I ++E+ L V P + + + + +GLSGGE+SF+T+C L++ E P R +DEFDVFM Sbjct: 961 LTQLLQALEETLRRRNEMWTKFRKLITLRTKEL---FELYLSQRNFTGKLVIKHQEEFLEPRV-YPANRNLATAHNRHEKSKVSVQGLSGGEKSFATICMLLSIWEAMSCPLRCLDEFDVFM 1078 The following BLAST results are available for this feature:
BLAST of DR908739 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DR908739 ID=DR908739; Name=DR908739; organism=Citrus sinensis; type=EST; length=586bpback to top |