CN189489

Overview
NameCN189489
Unique NameCN189489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5453 contig Csv1_Contig5453:528..1304. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189489 vs. ExPASy Swiss-Prot
Match: WNK4_ARATH (Probable serine/threonine-protein kinase WNK4 OS=Arabidopsis thaliana GN=WNK4 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 3.338e-14
Identity = 53/134 (39.55%), Postives = 76/134 (56.72%), Query Frame = -1 
Query:  238 QEDLLGNDDASSNGSVNSFKYSSWDYHSGNEDDYEFSHRAGEPLCIARATQKSTRFCPEAAMNNDRCNSEDVNSWKACSTNS----NNHRKLSRIRSLVDVRSQLLHRSLVEEIHKRRLFKTVGAIENIGFHEP 627
            Q+DL  +D+  S  S +S  YS+ +Y + +E      + +  P  +   T   TRFCPE    +    S   N++ A S+ +    +++R L+R RSLVDV+ QLLHRS  EE  KRRLFKTVG +E +GF  P
Sbjct:  439 QDDL--HDETYSQSSSHSGSYSNLNYIAVDE------YSSQSP--VMSRTHNMTRFCPE---ESSHLQSGQANAYAASSSTNRSLASDNRTLTRNRSLVDVQRQLLHRSPGEEARKRRLFKTVGDVETVGFQSP 559
The following BLAST results are available for this feature:
BLAST of CN189489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
WNK4_ARATH3.338e-1439.55Probable serine/threonine-protein kinase WNK4 OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001P04_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001P04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189489 ID=CN189489; Name=CN189489; organism=Citrus sinensis; type=EST; length=777bp
CAGCCCACCATTTTATTTTATTATATCAACTGGAAACGGGGTCGTTCCAA
TTATTGCAACAGACCGAGATTTTCACAGCTCACAAGGTTCAATAGTTTTT
AATTTTACACAACAAAAGCATTCATTAAACACACCAGAAAGCAAAAACAA
TTTTTACAATATCATCATTGTGGAATCTGCTTCCAATTTTCGTCATGATC
TGGAAACGGGGCATCTTCCGTAAGCGGCACAATTAGCTGGTTCATGAAAC
CCAATGTTCTCAATAGCACCAACAGTCTTAAACAATCGCCTCTTGTGGAT
TTCCTCCACCAGTGACCTGTGCAGCAACTGGCTCCGTACATCAACCAGTG
ACCGAATCCTGGACAATTTCCTGTGGTTATTACTGTTTGTACTACAAGCT
TTCCAGGAATTTACATCTTCACTATTGCAGCGGTCATTGTTCATGGCAGC
TTCAGGGCAGAATCTTGTAGATTTTTGAGTTGCCCTTGCAATGCAGAGTG
GCTCTCCTGCTCTGTGGCTGAACTCATAATCATCTTCATTGCCTGAGTGG
TAATCCCAGCTTGAGTACTTGAAAGAATTAACAGAACCATTGGAACTCGC
ATCATCATTGCCCAACAAGTCTTCTTGTTGAAGCCAACTGGGAGGAGAAT
TCGCATTGTTTGTGAAGAAAGCTGGGAGAGAAGCGTGCGACGAGGAATGG
GAAGAGTTAGAGTAGAAAGGGTGGTAGATTCCGTAGTCGTCATTGTCATC
ATCTTCATCTTCATAGCTAAAGCTGTG
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