DR908735

Overview
NameDR908735
Unique NameDR908735
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908735 vs. ExPASy Swiss-Prot
Match: SF3A1_ARATH (Probable splicing factor 3 subunit 1 OS=Arabidopsis thaliana GN=At1g14650 PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 2.711e-40
Identity = 83/110 (75.45%), Postives = 94/110 (85.45%), Query Frame = 3
Query:   96 KRQKLDDSMLIPEDQFLAQHPGPVRVTVAVPNVDEGNLKGQLLEITMQSLSETVGSLKEKISGEIQLPANKQKLSGKAGFLKDNMSLAYYNVTTGETLTLSLRERGGRKR 425
            KRQK D+S L+PEDQFLAQHPGP  + V+ PN ++G    Q +EIT+QSLSE VGSLKEKI+GEIQ+PANKQKLSGKAGFLKDNMSLA+YNV  GE LTLSLRERGGRKR
Sbjct:  680 KRQKFDESALVPEDQFLAQHPGPATIRVSKPNENDG----QFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERGGRKR 785          
BLAST of DR908735 vs. ExPASy Swiss-Prot
Match: SF3A1_HUMAN (Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   96 KRQKLDDSMLIPEDQFLAQHPGPVRVTVAVPNVD---EGNLKGQLLEITMQSLSETVGSLKEKISGEIQLPANKQKLSGKAGFLKDNMSLAYYNVTTGETLTLSLRERGGRKR 425
            K+ K +DS L+PE++FL ++ GPV + V VPN+    E  L GQ+L  T+  L++ V  +K KI     +PA KQKL  +  F+KD+ SLAYYN+  G  + L+L+ERGGRK+
Sbjct:  683 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793          
BLAST of DR908735 vs. ExPASy Swiss-Prot
Match: SF3A1_BOVIN (Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.487e-18
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   96 KRQKLDDSMLIPEDQFLAQHPGPVRVTVAVPNVD---EGNLKGQLLEITMQSLSETVGSLKEKISGEIQLPANKQKLSGKAGFLKDNMSLAYYNVTTGETLTLSLRERGGRKR 425
            K+ K +DS L+PE++FL ++ GPV + V VPN+    E  L GQ+L  T+  L++ V  +K KI     +PA KQKL  +  F+KD+ SLAYYN+  G  + L+L+ERGGRK+
Sbjct:  683 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQVLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMANGAVIHLALKERGGRKK 793          
BLAST of DR908735 vs. ExPASy Swiss-Prot
Match: SF3A1_MOUSE (Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3a1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.469e-17
Identity = 51/113 (45.13%), Postives = 74/113 (65.49%), Query Frame = 3
Query:   96 KRQKLDDSMLIPEDQFLAQHPGPVRVTVAVPNVD---EGNLKGQLLEITMQSLSETVGSLKEKISGEIQLPANKQKLSGKAGFLKDNMSLAYYNVTTGETLTLSLRERGGRKR 425
            K+ K +DS L+PE++FL ++ GPV + V VPN+    E  L GQ L  T+  L++ V  +K KI     +PA KQKL  +  F+KD+ SLAYYN+ +G  + L+L+ERGGRK+
Sbjct:  681 KKLKTEDS-LMPEEEFLRRNKGPVSIKVQVPNMQDKTEWKLNGQGLVFTLP-LTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERGGRKK 791          
The following BLAST results are available for this feature:
BLAST of DR908735 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SF3A1_ARATH2.711e-4075.45Probable splicing factor 3 subunit 1 OS=Arabidopsi... [more]
SF3A1_HUMAN8.487e-1845.13Splicing factor 3 subunit 1 OS=Homo sapiens GN=SF3... [more]
SF3A1_BOVIN8.487e-1845.13Splicing factor 3 subunit 1 OS=Bos taurus GN=SF3A1... [more]
SF3A1_MOUSE2.469e-1745.13Splicing factor 3 subunit 1 OS=Mus musculus GN=Sf3... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16863 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_A01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908735 ID=DR908735; Name=DR908735; organism=Citrus sinensis; type=EST; length=586bp
CTGTGACTATGATGCAGCCACCACCTTTGCCTCATGGGATGCCTCCTCCA
CCTCCAACTGAAGCTCCGCCGCCACTTCCAGAAGAGCCGGAGCCAAAGAG
GCAGAAGCTTGATGATTCTATGCTTATTCCTGAAGATCAATTTCTGGCAC
AGCATCCGGGACCTGTTCGCGTCACCGTGGCTGTTCCCAATGTTGATGAA
GGAAATCTGAAAGGGCAACTTCTGGAGATTACAATGCAGTCCTTATCTGA
AACTGTTGGCAGTTTGAAAGAGAAAATTTCTGGGGAGATTCAACTTCCTG
CAAACAAACAGAAATTGAGTGGAAAAGCTGGTTTTCTGAAGGATAATATG
TCACTTGCATATTATAATGTCACAACAGGGGAAACACTAACTCTTTCTTT
GAGAGAGCGGGGTGGTAGAAAGAGATAATGGGCTTCTTAATGGGGCTATA
CTTGAGGTTTTTGTTGGAACTGCCTTCTTACCCTAAGACTTTTCCATTTT
TCCATGTATAACAACAGTTTTATAACTCAACCTGCATTGATGCTATATGT
GGGATGTTGTATTGCTTATTTTTCTTTGGGATAAGT
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