DR908731

Overview
NameDR908731
Unique NameDR908731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length587
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908731 vs. ExPASy Swiss-Prot
Match: Y1491_ARATH (DUF246 domain-containing protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.853e-21
Identity = 57/154 (37.01%), Postives = 81/154 (52.60%), Query Frame = 2 
Query:  125 RPSANAKQSDLWLPLANQGWR-SCAQSANNPSLPQKSQGYIQVFLDGGLNQQRMGICDAVAVTKILNATLVIPYLEVNPVWQDSSSFMDIYDVDHFINVLKDDISIVKELPNEFSWSTREYYXXXXXXXXXXXXPVHASANWYLENVLPVLQSY 583
            RPS      +LW    + GWR S A  ++ P   +++ GY++V  +GGLNQQR  IC+AV   +I+NATLV+P L+ N  W D S F  IYDV+HFI  LK D+ IV ++P+       +              P  A   WYL   L  ++ +
Sbjct:   53 RPS-KINVEELWESAKSGGWRPSSAPRSDWPPPTKETNGYLRVRCNGGLNQQRSAICNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPD-----VHKNGKTKKIKAFQIRPPRDAPIEWYLTTALKAMREH 200
The following BLAST results are available for this feature:
BLAST of DR908731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y1491_ARATH2.853e-2137.01DUF246 domain-containing protein At1g04910 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16859 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-18_D04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908731 ID=DR908731; Name=DR908731; organism=Citrus sinensis; type=EST; length=587bp
GTTCTCGGAATGGAATGGTCCAAAACCTAGGCACCTGCCTCTGCTCAAGA
GTGCTTTGCAACACCAGAAAGAACCAAATGCTCCTAAGCCTAGGCACTTA
CCTCTGTTCAAGAGTGCTTTACAGCGCCCAAGTGCAAATGCCAAGCAGTC
TGATCTCTGGCTACCTTTGGCCAACCAAGGATGGAGATCATGTGCTCAAT
CTGCAAATAATCCTTCATTACCTCAGAAATCTCAAGGATACATTCAGGTA
TTTCTTGATGGAGGGTTAAACCAGCAGAGAATGGGGATATGTGATGCAGT
TGCTGTTACAAAAATTCTGAATGCAACACTTGTGATCCCATATCTTGAAG
TAAATCCTGTTTGGCAGGATTCAAGTTCCTTCATGGATATATATGATGTC
GATCACTTTATTAATGTATTAAAAGATGATATTTCTATTGTCAAAGAACT
TCCTAATGAGTTTTCTTGGAGCACAAGGGAGTATTATGCCACTGCTATTC
GTGCCACCAGAATCAAGACAGCACCAGTTCATGCTTCAGCTAACTGGTAC
CTAGAGAATGTCTTGCCTGTACTCCAGAGTTATGGGG
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