CN189441

Overview
NameCN189441
Unique NameCN189441
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6031 contig Csv1_Contig6031:194..912. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH_CUCSA (Ferrochelatase-2, chloroplastic OS=Cucumis sativus GN=HEMH PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.034e-48
Identity = 115/208 (55.29%), Postives = 141/208 (67.79%), Query Frame = 2
Query:  149 MDAASCSGVLSRAKLPVS-NLHKFNQTLGSHI------VSVSCQSSEGLNNVNRVSSQALAYT--------VRESYLCGPVQRRNPAG--ICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVN 721
            MDAAS S  LS  KL  S N    +Q + S        V+ SC++S  L   +R +   ++ +        ++  +L GP+++++  G   C+ G  T GE A+E  S +QA +DKVGVLLLNLGGP+TL DVQPFL+NLFADPDIIRLPRLFRFLQ PLAKLIS  RAPKSKEGYA+IGGGSPLRKITDEQAQALK AL  KN+  N
Sbjct:    1 MDAASSSLALSNIKLHGSTNTLNSDQRISSLCSLPKSRVTFSCKTSGNLQVRDRSTGLVVSCSSSNGDRDVIQGLHLSGPIEKKSRLGQACCSVGTFTVGEFALE--SQSQAVDDKVGVLLLNLGGPETLDDVQPFLYNLFADPDIIRLPRLFRFLQEPLAKLISTYRAPKSKEGYASIGGGSPLRKITDEQAQALKMALAEKNMSTN 206          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH1_ORYSJ (Ferrochelatase-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os09g0297000 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.130e-43
Identity = 96/155 (61.94%), Postives = 111/155 (71.61%), Query Frame = 2
Query:  257 QSSEGLNNVNRVSSQALAYTVRESYLCGPVQRRNPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVN 721
            Q+  G    +++++   +Y+V  S +    Q  +     A    T+ EN     SHA  AE+KVGVLLLNLGGP+TL DVQPFLFNLFADPDIIRLPRLFRFLQ PLAKLIS  RAPKSKEGYA+IGGGSPLRKITDEQA ALK AL+ KNL  N
Sbjct:   46 QNLHGNVKPSQLAASGSSYSVHRSPVLKQRQNLSARSTSADVYTTFDENVRAVSSHA--AEEKVGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFRFLQRPLAKLISTFRAPKSKEGYASIGGGSPLRKITDEQANALKVALKKKNLNAN 198          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH1_ARATH (Ferrochelatase-1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=HEM15 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.825e-40
Identity = 86/125 (68.80%), Postives = 100/125 (80.00%), Query Frame = 2
Query:  347 QRRNPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVN 721
            Q R+  G C+     Y E + +  SH   AEDK+GVLLLNLGGP+TL+DVQPFL+NLFADPDIIRLPR F+FLQ  +AK ISVVRAPKSKEGYAAIGGGSPLRKITDEQA A+K +L+AKN+  N
Sbjct:   63 QARSVTGDCS-----YDETSAKARSHV-VAEDKIGVLLLNLGGPETLNDVQPFLYNLFADPDIIRLPRPFQFLQGTIAKFISVVRAPKSKEGYAAIGGGSPLRKITDEQADAIKMSLQAKNIAAN 181          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH_HORVU (Ferrochelatase-2, chloroplastic OS=Hordeum vulgare GN=HEMH PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.065e-40
Identity = 85/108 (78.70%), Postives = 93/108 (86.11%), Query Frame = 2
Query:  389 TYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNL 712
            T+ E+     SHA   E+KVGVLLLNLGGP+TL+DVQPFLFNLFADPDIIRLPRLFRFLQ PLAKLIS  RAPKS EGYA+IGGGSPLRKITDEQA ALK AL++KNL
Sbjct:   92 TFDEDVKGVSSHA--VEEKVGVLLLNLGGPETLNDVQPFLFNLFADPDIIRLPRLFRFLQRPLAKLISTFRAPKSNEGYASIGGGSPLRKITDEQANALKVALKSKNL 197          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH_ORYSI (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. indica GN=HEMH PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36
Identity = 75/92 (81.52%), Postives = 85/92 (92.39%), Query Frame = 2
Query:  440 DKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLP 715
            +K+GVLLLNLGGP+TL DVQPFLFNLFADPDIIRLPRLFRFLQ PLA+ ISVVRAPKSKEGYA+IGGGSPLR+ITD QA+AL+ AL  K++P
Sbjct:  112 EKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRQITDAQAEALRKALCDKDIP 203          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH2_ORYSJ (Ferrochelatase-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0361200 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.726e-36
Identity = 75/92 (81.52%), Postives = 85/92 (92.39%), Query Frame = 2
Query:  440 DKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLP 715
            +K+GVLLLNLGGP+TL DVQPFLFNLFADPDIIRLPRLFRFLQ PLA+ ISVVRAPKSKEGYA+IGGGSPLR+ITD QA+AL+ AL  K++P
Sbjct:  112 EKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPRLFRFLQKPLAQFISVVRAPKSKEGYASIGGGSPLRQITDAQAEALRKALCDKDIP 203          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH2_ARATH (Ferrochelatase-2, chloroplastic OS=Arabidopsis thaliana GN=At2g30390 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 76/120 (63.33%), Postives = 91/120 (75.83%), Query Frame = 2
Query:  356 NPAGICAAGVATYGENAVEYESHAQAAEDKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLP 715
            NP  I ++ V +   +A+   S     + K+GVLLLNLGGP+TL DVQPFLFNLFADPDIIRLP +F+FLQ PLA+ ISV RAPKSKEGYA+IGGGSPLR ITD QA+ L+  L  KN+P
Sbjct:   75 NPLNISSSSVIS---DAIS-SSSVITDDAKIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPPVFQFLQKPLAQFISVARAPKSKEGYASIGGGSPLRHITDAQAEELRKCLWEKNVP 190          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH_THEEB (Ferrochelatase OS=Thermosynechococcus elongatus (strain BP-1) GN=hemH PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.075e-24
Identity = 59/93 (63.44%), Postives = 72/93 (77.42%), Query Frame = 2
Query:  443 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPVN 721
            + GVLLLNLGGPD   DV+PFL+NLF+DP+IIRLP  FR+LQ PLA  IS  RA +S+  YA IGGGSPLR+IT++QA+ALK ALE   +  N
Sbjct:    4 QTGVLLLNLGGPDRPEDVRPFLYNLFSDPEIIRLP--FRWLQKPLAWFISTSRARRSQANYAQIGGGSPLRRITEQQARALKDALEGIGIEAN 94          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH_CYAP8 (Ferrochelatase OS=Cyanothece sp. (strain PCC 8801) GN=hemH PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.075e-24
Identity = 59/86 (68.60%), Postives = 71/86 (82.56%), Query Frame = 2
Query:  440 DKVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTAL 697
            D+VGVLLLNLGGP+ L DV+PFLFNLF+DP+IIRLP  F +LQ PLA LIS +R+ KS+E Y  IGGGSPLRKIT+ QA+AL+  L
Sbjct:    2 DRVGVLLLNLGGPEQLEDVRPFLFNLFSDPEIIRLP--FPWLQKPLAWLISSLRSEKSQENYKQIGGGSPLRKITEAQAEALEQRL 85          
BLAST of CN189441 vs. ExPASy Swiss-Prot
Match: HEMH_GLOVI (Ferrochelatase OS=Gloeobacter violaceus GN=hemH PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.403e-24
Identity = 59/92 (64.13%), Postives = 72/92 (78.26%), Query Frame = 2
Query:  443 KVGVLLLNLGGPDTLHDVQPFLFNLFADPDIIRLPRLFRFLQWPLAKLISVVRAPKSKEGYAAIGGGSPLRKITDEQAQALKTALEAKNLPV 718
            +VGVLLLNLGGPD   DV+PFL+NLFADP+IIR+P     LQ PLA LIS +RAPKS++ Y AIGGGSPLR IT++Q + LK AL A+ L +
Sbjct:    3 EVGVLLLNLGGPDKQEDVRPFLYNLFADPEIIRIP--VPPLQKPLAWLISTLRAPKSRKNYQAIGGGSPLRAITNQQGRVLKKALAARGLDI 92          
The following BLAST results are available for this feature:
BLAST of CN189441 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
HEMH_CUCSA9.034e-4855.29Ferrochelatase-2, chloroplastic OS=Cucumis sativus... [more]
HEMH1_ORYSJ5.130e-4361.94Ferrochelatase-1, chloroplastic OS=Oryza sativa su... [more]
HEMH1_ARATH1.825e-4068.80Ferrochelatase-1, chloroplastic/mitochondrial OS=A... [more]
HEMH_HORVU4.065e-4078.70Ferrochelatase-2, chloroplastic OS=Hordeum vulgare... [more]
HEMH_ORYSI2.726e-3681.52Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ORYSJ2.726e-3681.52Ferrochelatase-2, chloroplastic OS=Oryza sativa su... [more]
HEMH2_ARATH1.654e-3363.33Ferrochelatase-2, chloroplastic OS=Arabidopsis tha... [more]
HEMH_THEEB1.075e-2463.44Ferrochelatase OS=Thermosynechococcus elongatus (s... [more]
HEMH_CYAP81.075e-2468.60Ferrochelatase OS=Cyanothece sp. (strain PCC 8801)... [more]
HEMH_GLOVI1.403e-2464.13Ferrochelatase OS=Gloeobacter violaceus GN=hemH PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N22_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189441 ID=CN189441; Name=CN189441; organism=Citrus sinensis; type=EST; length=721bp
TTTTTTTTTTTCTCCTTTTTAGATTCGGTCTCAACTAACCCTCGAAAATA
TCTCAGCATAAAGAAAAATAAAAATACCNGTTTTGTCATTCTCATTTTCT
CAATTCTGGTTCGGTTTTAATTGAAAATAGAGGTTAAGCATCGACTCCAT
GGACGCCGCATCATGCTCTGGAGTTCTTTCACGCGCGAAGCTCCCTGTTT
CGAATCTTCATAAATTCAATCAAACATTAGGTTCTCACATCGTATCGGTG
TCCTGCCAGTCATCTGAGGGATTGAATAATGTCAATAGAGTTTCCTCTCA
AGCGCTCGCATATACTGTCAGGGAATCTTATCTTTGCGGTCCTGTGCAGA
GAAGAAATCCTGCAGGGATTTGTGCTGCAGGAGTAGCAACATATGGTGAA
AATGCTGTAGAATATGAATCTCATGCACAGGCCGCAGAAGATAAGGTTGG
GGTGTTGCTTCTGAATCTTGGAGGGCCTGACACGCTTCATGATGTTCAGC
CATTTCTGTTCAATTTATTTGCAGATCCAGACATTATACGTCTTCCCAGG
CTGTTTCGGTTTCTTCAGTGGCCCTTGGCAAAGTTGATTTCTGTGGTACG
GGCTCCCAAAAGTAAAGAAGGATATGCTGCCATAGGAGGTGGCTCACCAT
TGCGCAAAATAACAGATGAGCAGGCACAAGCACTTAAAACAGCTTTAGAA
GCCAAAAACTTGCCCGTAAAT
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