CN189421

Overview
NameCN189421
Unique NameCN189421
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3442 contig Csv1_Contig3442:555..1090. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 4.142e-42
Identity = 79/88 (89.77%), Postives = 86/88 (97.73%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KITDFIKFDVGN+ MVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPKGKGIKL+I+EEA+KR
Sbjct:  164 KITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRLGNVFTIGKGTKPWVSLPKGKGIKLTILEEAKKR 251
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.574e-41
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KI DFIKFDVGN+ MVTGGRNRGRVG+IKNREKHKGSFETIH+QDA GHEFATRLGNVFTIGKG+KPWVSLPK KGIKLSIIEEARKR
Sbjct:  168 KIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDAAGHEFATRLGNVFTIGKGTKPWVSLPKRKGIKLSIIEEARKR 255
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 167.162 bits (422), Expect = 4.579e-41
Identity = 78/88 (88.64%), Postives = 84/88 (95.45%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KI DFIKFDVGN+ MVTGGRN GRVG+IKNREKHKGSFETIH++DALGH+FATRLGNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  168 KIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDALGHQFATRLGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 4.579e-41
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KI +FIKFDVGN+ MVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  168 KIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 167.162 bits (422), Expect = 4.579e-41
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KI +FIKFDVGN+ MVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  168 KIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 4.579e-41
Identity = 78/88 (88.64%), Postives = 85/88 (96.59%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KI +FIKFDVGN+ MVTGGRNRGRVG+IKNREKHKGSFETIHIQD+ GHEFATRLGNV+TIGKG+KPWVSLPKGKGIKL+IIEEARKR
Sbjct:  168 KIVEFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHIQDSTGHEFATRLGNVYTIGKGTKPWVSLPKGKGIKLTIIEEARKR 255
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.981e-41
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KI DFIKFDVGN+ MVTGGRNRGRVG+IKNREKHKGSFET+HIQD+ GHEFATRLGNVFT+GKG+KPWVSLPKGKGIKL+IIE+ARKR
Sbjct:  168 KIVDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETLHIQDSQGHEFATRLGNVFTLGKGTKPWVSLPKGKGIKLTIIEDARKR 255
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 1.740e-40
Identity = 76/88 (86.36%), Postives = 84/88 (95.45%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KI DFIKFDVGN+ MVTGGRN GRVG+IKNREKHKGSFETIH++D+LGH+FATR+GNVFTIGKG+KPWVSLPKGKGIKLSIIEE RKR
Sbjct:  168 KIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVEDSLGHQFATRMGNVFTIGKGNKPWVSLPKGKGIKLSIIEEQRKR 255
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 135.961 bits (341), Expect = 1.130e-31
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  168 KITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
[Close]
BLAST of CN189421 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 135.576 bits (340), Expect = 1.476e-31
Identity = 60/88 (68.18%), Postives = 74/88 (84.09%), Query Frame = -3 
Query:  271 KITDFIKFDVGNIFMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 534
            KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:  168 KITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
The following BLAST results are available for this feature:
BLAST of CN189421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
RS4_PRUAR4.142e-4289.7740S ribosomal protein S4 OS=Prunus armeniaca GN=RP... [more]
RS4_GOSHI1.574e-4190.9140S ribosomal protein S4 OS=Gossypium hirsutum GN=... [more]
RS4_ORYSJ4.579e-4188.6440S ribosomal protein S4 OS=Oryza sativa subsp. ja... [more]
RS43_ARATH4.579e-4188.6440S ribosomal protein S4-3 OS=Arabidopsis thaliana... [more]
RS42_ARATH4.579e-4188.6440S ribosomal protein S4-2 OS=Arabidopsis thaliana... [more]
RS41_ARATH4.579e-4188.6440S ribosomal protein S4-1 OS=Arabidopsis thaliana... [more]
RS4_SOLTU5.981e-4187.5040S ribosomal protein S4 OS=Solanum tuberosum GN=R... [more]
RS4_MAIZE1.740e-4086.3640S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ... [more]
RS4Y1_MONDO1.130e-3168.1840S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO1.476e-3168.1840S ribosomal protein S4, X isoform OS=Monodelphis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189421 ID=CN189421; Name=CN189421; organism=Citrus sinensis; type=EST; length=536bp
TTTTTTTTTTTTTTAACGATAAAGAGATACATGAACTTAGATTAAATAGT
TGAAAATAACATCCACCAAATAGTAGCTAAAATAAAAAAGGACAAAGCAG
GTTCAAAATTGTGCTGATAAAAATAAAAATAAAAATAAAGATTCATTTTT
GCATCGGTCCTACTTCAGCTTTAGAGAGTGCCAATCAGCTCTAATTCAAC
AAGAAAAAACAAAGCAGCAAAATGCATCCAAATTCATTGTAAAAGCTTAA
GCAGCAGCCTGGGCAGCCTGTCTCTTCCTAGCTTCCTCAATGATGGACAA
CTTAATACCCTTGCCCTTAGGAAGTGACACCCATGGTTTTGAACCCTTCC
CGATGGTGAACACATTGCCTAGACGAGTTGCAAACTCATGACCAAGGGCA
TCTTGAATATGGATGGTCTCAAAACTTCCCTTATGCTTTTCCCTGTTCTT
GATGATTCCAACTCGACCTCTGTTTCTACCCCCAGTGACCATGAAAATAT
TCCCAACATCAAACTTGATGAAGTCAGTGATCTTGT
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