CN189417

Overview
NameCN189417
Unique NameCN189417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length720
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9254 contig Csv1_Contig9254:1307..2026. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189417 vs. ExPASy Swiss-Prot
Match: HFA1E_ARATH (Heat stress transcription factor A-1e OS=Arabidopsis thaliana GN=HSFA1E PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 45/109 (41.28%), Postives = 63/109 (57.80%), Query Frame = -3 
Query:  386 NAENLDP--TALDGTMSIDADAFSPDHDVDVSPDGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSE-LEQQPEQANGWDNFQHMDHLTEQMGLLTSESRR 703
            N E LDP    LDG + ++AD  +              LP + D+FWE+F+  SP+ G+TDE+ S  +E+ +  E LE Q   +N W   Q M+HLTEQMGLLTS++ R
Sbjct:  371 NGECLDPIMAVLDGALELEADTLN------------ELLPEVQDSFWEQFIGESPVIGETDELISGSVENELILEQLELQSTLSNVWSKNQQMNHLTEQMGLLTSDALR 467
[Close]
BLAST of CN189417 vs. ExPASy Swiss-Prot
Match: HSFA1_ORYSJ (Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 34/71 (47.89%), Postives = 47/71 (66.20%), Query Frame = -3 
Query:  398 DGIHKLPRIDDAFWEEFLTASPLPGDTDEINSSPLESGMTSELEQQPEQANGWDNFQHMDHLTEQMGLLTS 610
            D   KLP I D+FWE+FL ASPL  D DE++S  L+       +++ +Q NGW   ++M +LTEQMGLL+S
Sbjct:  439 DDTQKLPAIIDSFWEQFLVASPLSVDNDEVDSGVLD-------QKETQQGNGWTKAENMANLTEQMGLLSS 502
The following BLAST results are available for this feature:
BLAST of CN189417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HFA1E_ARATH2.228e-1441.28Heat stress transcription factor A-1e OS=Arabidops... [more]
HSFA1_ORYSJ2.306e-1147.89Heat stress transcription factor A-1 OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001N05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189417 ID=CN189417; Name=CN189417; organism=Citrus sinensis; type=EST; length=720bp
TTTTTTTCAAGATTCAGCTACTATTATCCTCTTTTCATATATAATACACA
TACACCATACGACGATATCAAACTGCATTATGTATGATACTCTTACCGTC
ATTCAGAGAGTTTCTTCAGACCATTCACAATGAAATTCTTAAAACATTTA
GTGATGACAAAAAGGTTCCTAAACTTCAAGGTCATGCCCTTGGACAAAAG
CTTTTCTGCTCAGCAGCACTGAACAATGGAATTCTTAAGACATTTGGTAA
TGGCAAAAAGGTTCCATAAACTTCAAGGGCATATCTTTGGACAAAAGCTT
TATCTGCTCAGCAGCACAGAACATCAACCTCTGCAAGACTCAAGACAGGC
TGAAACACATATATACATGAGGTAAGACCTCAAAGCCTCCTGCTCTCAGA
TGTAAGAAGGCCCATCTGCTCTGTAAGATGATCCATATGCTGAAAATTAT
CCCATCCATTTGCCTGCTCTGGCTGCTGTTCAAGCTCACTGGTCATACCA
CTTTCCAATGGGCTTGAATTAATCTCATCTGTGTCACCTGGGAGAGGGCT
AGCCGTAAGAAACTCTTCCCAAAATGCATCATCAATTCGTGGAAGCTTAT
GGATACCATCTGGCGAAACATCCACATCATGATCAGGAGAAAAGGCATCA
GCGTCTATGGACATTGTTCCATCCAAAGCTGTTGGATCCAAATTTTCTGC
ATTTCCGTTTCCAGACAACA
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