CN189406

Overview
NameCN189406
Unique NameCN189406
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13239 contig Csv1_Contig13239:791..1476. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH_SOLTU (Formate dehydrogenase, mitochondrial OS=Solanum tuberosum GN=FDH1 PE=1 SV=2)

HSP 1 Score: 346.28 bits (887), Expect = 9.028e-95
Identity = 162/183 (88.52%), Postives = 173/183 (94.54%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 550
            TVG GRIG+LLLQRLKPFNCNLLYHDR+KMD +LE + GAKFEEDLD ML KCDIVV+NTPLTEKT+GMFDK+RIAK+KKGVLIVNNARGAIMDTQAVVDAC+SGHIAGYSGDVW PQPAPKDHPWRYMPNQAMTPH+SGTTIDAQLRYAAG KDMLDRYFKGEDFP +NYIVK GELAPQYR
Sbjct:  199 TVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDSELENQIGAKFEEDLDKMLSKCDIVVINTPLTEKTKGMFDKERIAKLKKGVLIVNNARGAIMDTQAVVDACNSGHIAGYSGDVWYPQPAPKDHPWRYMPNQAMTPHISGTTIDAQLRYAAGTKDMLDRYFKGEDFPAENYIVKDGELAPQYR 381          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH1_ORYSJ (Formate dehydrogenase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486800 PE=1 SV=2)

HSP 1 Score: 343.199 bits (879), Expect = 7.643e-94
Identity = 158/183 (86.34%), Postives = 173/183 (94.54%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 550
            TVG GRIG+LLLQRLKPFNCNLLYHDR+K+DP+LEKE GAK+EEDLD MLPKCD++V+NTPLTEKTRGMF+K+RIAKMKKGV+IVNNARGAIMDTQAV DACSSG +AGY GDVW PQPAPKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVK G+LA QY+
Sbjct:  194 TVGAGRIGRLLLQRLKPFNCNLLYHDRLKIDPELEKEIGAKYEEDLDAMLPKCDVIVINTPLTEKTRGMFNKERIAKMKKGVIIVNNARGAIMDTQAVADACSSGQVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKEGQLASQYQ 376          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH_HORVU (Formate dehydrogenase, mitochondrial OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 340.502 bits (872), Expect = 4.954e-93
Identity = 157/183 (85.79%), Postives = 173/183 (94.54%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 550
            TVG GR G+LLLQRLKPFNCNLLYHDR++++P+LEKE GAKFEEDLD MLPKCD+VV+NTPLTEKTRGMF+K++IAKMKKGV+IVNNARGAIMDTQAV DACSSGHIAGY GDVW PQPAPKDHPWRYMPN AMTPH+SGTTIDAQLRYAAGVKDMLDRYFKGE+FPV+NYIVK GELA QY+
Sbjct:  195 TVGAGRYGRLLLQRLKPFNCNLLYHDRLQINPELEKEIGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKEKIAKMKKGVIIVNNARGAIMDTQAVADACSSGHIAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEEFPVENYIVKEGELASQYK 377          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH2_ORYSJ (Formate dehydrogenase 2, mitochondrial OS=Oryza sativa subsp. japonica GN=Os06g0486900 PE=2 SV=1)

HSP 1 Score: 339.732 bits (870), Expect = 8.450e-93
Identity = 157/183 (85.79%), Postives = 170/183 (92.90%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 550
            TVG GRIG+LLLQRLKPFNCNL+YHDRVK+DP+LEKE GAK+EEDLD MLPKCD+VV+N PLTEKTRGMF+K+RIAKMKKGV IVNNARGAIMDTQAV DAC+SGH+AGY GDVW PQPAPKDHPWRYMPN AMTPH SGTTID QLRYAAGVKDMLDRYFKGEDFP QNYIVKAG+LA QY+
Sbjct:  196 TVGAGRIGRLLLQRLKPFNCNLMYHDRVKIDPELEKEIGAKYEEDLDAMLPKCDVVVINMPLTEKTRGMFNKERIAKMKKGVTIVNNARGAIMDTQAVADACASGHVAGYGGDVWFPQPAPKDHPWRYMPNHAMTPHCSGTTIDGQLRYAAGVKDMLDRYFKGEDFPAQNYIVKAGQLASQYQ 378          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH_ARATH (Formate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=FDH1 PE=1 SV=1)

HSP 1 Score: 328.176 bits (840), Expect = 2.544e-89
Identity = 153/183 (83.61%), Postives = 167/183 (91.26%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELAPQYR 550
            TVG GRIGKLLLQRLKPF CNLLYHDR++M P+LEKETGAKF EDL+ MLPKCD++V+N PLTEKTRGMF+K+ I K+KKGVLIVNNARGAIM+ QAVVDA  SGHI GYSGDVW+PQPAPKDHPWRYMPNQAMTPH SGTTIDAQLRYAAG KDML+RYFKGEDFP +NYIVK GELAPQYR
Sbjct:  202 TVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQYR 384          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH_NEUCR (Formate dehydrogenase OS=Neurospora crassa GN=fdh PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.409e-47
Identity = 95/186 (51.08%), Postives = 129/186 (69.35%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 538
            TVG GRIG+ +L+RLKPF+C  LLY+D   +  + E E G +   DL+ ML +CD+V +N PL EKT+G+F+K+ I+KMKKG  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAP+DHP RY  N      AM PH+SGT++DAQ RYAAG K +++ Y  G+ D+  ++ IV  G+ A
Sbjct:  170 TVGVGRIGERVLRRLKPFDCKELLYYDYQPLSAEKEAEIGCRRVADLEEMLAQCDVVTINCPLHEKTQGLFNKELISKMKKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPQDHPLRYAKNPFGGGNAMVPHMSGTSLDAQKRYAAGTKAIIESYLSGKHDYRPEDLIVYGGDYA 355          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH_EMENI (Probable formate dehydrogenase OS=Emericella nidulans GN=aciA PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.196e-46
Identity = 99/203 (48.77%), Postives = 132/203 (65.02%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMK-----------------KGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPN-----QAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGELA 538
            TVG GRIG+ +L+RLKPF+C  LLY+D   + P++EKE GA+  + L+ M+ +CD+V +N PL EKTRG+F+K+ I+KMK                 KG  +VN ARGAI+  + V +A  SGH+ GY GDVW PQPAPK+HP RY  +      A  PH+SGT+IDAQ+RYA G K +LD YF G  D+  Q+ IV  G+ A
Sbjct:  165 TVGVGRIGERVLRRLKPFDCKELLYYDYQPLRPEVEKEIGARRVDSLEEMVSQCDVVTINCPLHEKTRGLFNKELISKMKPGKSALLYLIIPMLMYHKGSWLVNTARGAIVVKEDVAEALKSGHLRGYGGDVWFPQPAPKEHPLRYAEHPWGGGNATVPHMSGTSIDAQIRYANGTKAILDSYFSGRFDYQPQDLIVHGGDYA 367          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH_PSESR (Formate dehydrogenase OS=Pseudomonas sp. (strain 101) PE=1 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 9.473e-44
Identity = 85/179 (47.49%), Postives = 114/179 (63.69%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCNLLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQAMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGEDFPVQNYIVKAGELA 538
            TV  GRIG  +L+RL PF+ +L Y DR ++   +EKE    +    + M P CD+V +N PL  +T  M + + +   K+G  IVN ARG + D  AV  A  SG +AGY+GDVW PQPAPKDHPWR MP   MTPH+SGTT+ AQ RYAAG +++L+ +F+G     +  IV+ G LA
Sbjct:  197 TVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 375          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH_PICAN (Formate dehydrogenase OS=Pichia angusta GN=FMDH PE=3 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 2.952e-37
Identity = 81/184 (44.02%), Postives = 116/184 (63.04%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEKETGAKFEEDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYFKGE-DFPVQNYIVKAGE 532
            T+G GRIG  +L+RL  FN   LLY+D   +  + E++ GA+   D+  ++ + DIV +N PL   ++G+ + + +   KKG  +VN ARGAI   + V  A  SG + GY GDVW PQPAPKDHPWR M N+     AMTPH SG+ IDAQ+RYA G K++L+ +F  + D+  Q+ I+  G+
Sbjct:  169 TIGAGRIGYRVLERLVAFNPKELLYYDYQSLSKEAEEKVGARRVHDIKELVAQADIVTINCPLHAGSKGLVNAELLKHFKKGAWLVNTARGAICVAEDVAAAVKSGQLRGYGGDVWFPQPAPKDHPWRSMANKYGAGNAMTPHYSGSVIDAQVRYAQGTKNILESFFTQKFDYRPQDIILLNGK 352          
BLAST of CN189406 vs. ExPASy Swiss-Prot
Match: FDH1_YEAST (Formate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=FDH1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.035e-37
Identity = 90/198 (45.45%), Postives = 121/198 (61.11%), Query Frame = 2
Query:    2 TVGCGRIGKLLLQRLKPFNCN-LLYHDRVKMDPQLEK---ETGAKFE---------EDLDTMLPKCDIVVVNTPLTEKTRGMFDKDRIAKMKKGVLIVNNARGAIMDTQAVVDACSSGHIAGYSGDVWNPQPAPKDHPWRYMPNQ-----AMTPHVSGTTIDAQLRYAAGVKDMLDRYF-KGEDFPVQNYIVKAGELA 538
            TVG GRIG  +L+RL  FN   LLY+D  ++  +      E    F          E L+ M+ + D+V +N PL + +RG+F+K  I+ MK G  +VN ARGAI   + V +A  SG +AGY GDVW+ QPAPKDHPWR M N+     AMT H+SGT++DAQ RYA GVK++L+ YF K  D+  Q+ IV+ G  A
Sbjct:  171 TVGAGRIGYRVLERLVAFNPKKLLYYDYQELPAEAINRLNEASKLFNGRGDIVQRVEKLEDMVAQSDVVTINCPLHKDSRGLFNKKLISHMKDGAYLVNTARGAICVAEDVAEAVKSGKLAGYGGDVWDKQPAPKDHPWRTMDNKDHVGNAMTVHISGTSLDAQKRYAQGVKNILNSYFSKKFDYRPQDIIVQNGSYA 368          
The following BLAST results are available for this feature:
BLAST of CN189406 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
FDH_SOLTU9.028e-9588.52Formate dehydrogenase, mitochondrial OS=Solanum tu... [more]
FDH1_ORYSJ7.643e-9486.34Formate dehydrogenase 1, mitochondrial OS=Oryza sa... [more]
FDH_HORVU4.954e-9385.79Formate dehydrogenase, mitochondrial OS=Hordeum vu... [more]
FDH2_ORYSJ8.450e-9385.79Formate dehydrogenase 2, mitochondrial OS=Oryza sa... [more]
FDH_ARATH2.544e-8983.61Formate dehydrogenase, mitochondrial OS=Arabidopsi... [more]
FDH_NEUCR2.409e-4751.08Formate dehydrogenase OS=Neurospora crassa GN=fdh ... [more]
FDH_EMENI1.196e-4648.77Probable formate dehydrogenase OS=Emericella nidul... [more]
FDH_PSESR9.473e-4447.49Formate dehydrogenase OS=Pseudomonas sp. (strain 1... [more]
FDH_PICAN2.952e-3744.02Formate dehydrogenase OS=Pichia angusta GN=FMDH PE... [more]
FDH1_YEAST5.035e-3745.45Formate dehydrogenase 1 OS=Saccharomyces cerevisia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M23_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189406 ID=CN189406; Name=CN189406; organism=Citrus sinensis; type=EST; length=686bp
GACTGTTGGTTGTGGACGCATTGGCAAGCTGTTGCTCCAACGACTTAAAC
CTTTCAATTGTAATCTCCTTTATCATGACCGGGTGAAGATGGATCCTCAA
TTGGAGAAAGAGACTGGAGCAAAATTTGAGGAGGATCTAGATACTATGCT
TCCCAAATGTGACATAGTTGTTGTCAACACCCCTCTAACAGAAAAGACGA
GAGGGATGTTTGACAAAGATAGGATTGCAAAGATGAAGAAGGGCGTCTTG
ATTGTCAACAATGCTCGAGGAGCAATCATGGACACACAAGCTGTTGTTGA
CGCTTGCTCTAGTGGACACATTGCAGGTTATAGTGGTGATGTTTGGAATC
CACAACCAGCTCCAAAGGACCATCCCTGGCGTTACATGCCAAATCAGGCA
ATGACCCCTCATGTTTCTGGGACCACTATTGATGCACAGCTACGCTATGC
TGCGGGAGTCAAGGATATGCTTGACAGATACTTCAAGGGAGAAGATTTTC
CTGTTCAAAATTACATAGTGAAGGCGGGGGAGCTGGCACCTCAATATCGA
TAATTTCACGTGTGAAGAGACTGATCGTTTGAGTTTATTCTCTGTTGAAC
AGGACCTTCTGGAATAATGTTCCTATGTTTGTACCTTCTGGCTTCTGGAA
TAATGTTCCTATGTTTGTAAGCTCTACATTTAACAA
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