CN189405

Overview
NameCN189405
Unique NameCN189405
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length727
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN189405_ssr592 microsatellite CN189405_ssr592:592..606. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX13_ARATH (WUSCHEL-related homeobox 13 OS=Arabidopsis thaliana GN=WOX13 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 9.782e-58
Identity = 125/216 (57.87%), Postives = 151/216 (69.91%), Query Frame = 2
Query:   59 MEWDNIRXXXXXXXXXXXXXXNHRGGENDNNSVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSANTLHNXXXXXXXXXXXXXDSEVETDVDSLLLHDEH*TTKPENL 706
            MEWDN                N +G + +  S   G MYVKVMTDEQ ETLRKQIA+Y TICE+LVEMHK+L+A QDLA  GGR+G +Y DP+M+S G HK++ARQRWTPTPVQL+ILE IFD+GTGTPSKQKIK+IT ELSQHGQI+E NVYNWFQNRRARSKRKQ    S+   +              +SEVET+V++L   +E    +PE+L
Sbjct:    2 MEWDN------QLQPNNHHSSNLQGIDVNGGSGAGGGMYVKVMTDEQYETLRKQIAIYGTICERLVEMHKTLTAQQDLA--GGRMGGLYADPMMSSLG-HKMTARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQHGGGSSGNNNG-------------ESEVETEVEAL---NEKRVVRPESL 192          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX8_ORYSJ (WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. japonica GN=WOX8 PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.409e-56
Identity = 108/147 (73.47%), Postives = 125/147 (85.03%), Query Frame = 2
Query:  140 NDNNSVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSAN 580
            +D      G+ YVKVMTDEQ+E LRKQI++YATICEQLVEMH++L+A QD + AG RLGN+YCDPLM  GG HKI+ARQRWTPTP+QL+ILE+IFD+G GTPSKQKIK+IT ELSQHGQISETNVYNWFQNRRARSKRKQ    + N
Sbjct:   15 DDRGGGEGGLGYVKVMTDEQMEVLRKQISIYATICEQLVEMHRALTAQQD-SIAGMRLGNLYCDPLMVPGG-HKITARQRWTPTPMQLQILENIFDQGNGTPSKQKIKDITAELSQHGQISETNVYNWFQNRRARSKRKQAALPNNN 159          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX14_ARATH (WUSCHEL-related homeobox 14 OS=Arabidopsis thaliana GN=WOX14 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.990e-43
Identity = 84/148 (56.76%), Postives = 111/148 (75.00%), Query Frame = 2
Query:  137 ENDNNSVVNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQLVSSSAN 580
            E  +  + NG    +VMT+EQ+E LRKQIAVYA IC+QLV +H SLS++  L++    +   Y DP+  S   H+IS R RWTPT  QL+ILESI+D G+GTP++++I+EI  ELS+HGQI+ETNVYNWFQNRRARSKRKQ  +++AN
Sbjct:   15 EEMDREIQNGAYSGRVMTEEQMEILRKQIAVYAVICDQLVLLHNSLSSYHPLSSGVRPMVGGYFDPMGASSSSHRISTRHRWTPTSTQLQILESIYDEGSGTPNRRRIREIATELSEHGQITETNVYNWFQNRRARSKRKQPQTTTAN 162          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX10_ARATH (Putative WUSCHEL-related homeobox 10 OS=Arabidopsis thaliana GN=WOX10 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.676e-39
Identity = 78/134 (58.21%), Postives = 102/134 (76.12%), Query Frame = 2
Query:  158 VNGVMYVKVMTDEQLETLRKQIAVYATICEQLVEMHKSLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 559
            +NG    +VMTDEQ+ETLRKQIA+YA +C+QLV +H SLS+   L++    +   Y DP++ S   H +S R RWTPT  QL+ILE+I+  G+GTP+ ++IKEIT+ELS+HGQI E NVY+WFQNRRARSKRKQ
Sbjct:    6 LNGRYGSRVMTDEQMETLRKQIAIYAVLCDQLVFLHNSLSSVPLLSSGMNPMRGEYFDPMVASSSAHGMSTRPRWTPTTTQLQILENIYKEGSGTPNPRRIKEITMELSEHGQIMEKNVYHWFQNRRARSKRKQ 139          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX7_ORYSJ (WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. japonica GN=WOX7 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.479e-13
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 2
Query:  269 SLSAHQDLAAAGGRLGNIYCDPLMTSGGGHKISARQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 556
            SL +     +AGG   ++   P  + G       + RW P P Q+RILE+IF+ G   P + +I  I ++L ++GQ+ + NV+ WFQNR++RSK K
Sbjct:   33 SLLSGSSAGSAGGGGYSLKSSPFSSVGEERVPDPKPRWNPRPEQIRILEAIFNSGMVNPPRDEIPRIRMQLQEYGQVGDANVFYWFQNRKSRSKNK 128          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX8_ARATH (WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana GN=WOX8 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.295e-13
Identity = 31/62 (50.00%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  371 RQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 556
            + RW P P Q+RILESIF+ GT  P +++I+ I + L ++GQI + NV+ WFQNR++R+K K
Sbjct:   53 KPRWNPKPEQIRILESIFNSGTINPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 114          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX9_ARATH (WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana GN=WOX9 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 29/62 (46.77%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  371 RQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRK 556
            + RW P P Q+RILE+IF+ G   P +++I+ I  +L ++GQ+ + NV+ WFQNR++RSK K
Sbjct:   53 KPRWNPKPEQIRILEAIFNSGMVNPPREEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 114          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSJ (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. japonica GN=WOX5 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  302 GGRLGNI------YCDPLMTSGGGHKISARQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 559
            GGR G           PL  +       A  RWTPT  Q+ +LE ++ +G  TP+ ++I++IT  L +HG I   NV+ WFQN +AR ++KQ
Sbjct:   13 GGRAGGFSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX5_ORYSI (WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. indica GN=WOX5 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.635e-12
Identity = 35/92 (38.04%), Postives = 51/92 (55.43%), Query Frame = 2
Query:  302 GGRLGNI------YCDPLMTSGGGHKISARQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 559
            GGR G           PL  +       A  RWTPT  Q+ +LE ++ +G  TP+ ++I++IT  L +HG I   NV+ WFQN +AR ++KQ
Sbjct:   13 GGRAGGFSDPPSPLSPPLSPASAAAAALANARWTPTKEQIAVLEGLYRQGLRTPTAEQIQQITARLREHGHIEGKNVFYWFQNHKARQRQKQ 104          
BLAST of CN189405 vs. ExPASy Swiss-Prot
Match: WOX1_ARATH (WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana GN=WOX1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.135e-12
Identity = 30/66 (45.45%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  362 ISARQRWTPTPVQLRILESIFDRGTGTPSKQKIKEITVELSQHGQISETNVYNWFQNRRARSKRKQ 559
            +    RW PTP QLR+LE ++ +GT TPS   I++IT +L ++G+I   NV+ WFQN +AR ++K+
Sbjct:   71 VMVSSRWNPTPDQLRVLEELYRQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 136          
The following BLAST results are available for this feature:
BLAST of CN189405 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
WOX13_ARATH9.782e-5857.87WUSCHEL-related homeobox 13 OS=Arabidopsis thalian... [more]
WOX8_ORYSJ2.409e-5673.47WUSCHEL-related homeobox 8 OS=Oryza sativa subsp. ... [more]
WOX14_ARATH3.990e-4356.76WUSCHEL-related homeobox 14 OS=Arabidopsis thalian... [more]
WOX10_ARATH2.676e-3958.21Putative WUSCHEL-related homeobox 10 OS=Arabidopsi... [more]
WOX7_ORYSJ1.479e-1337.50WUSCHEL-related homeobox 7 OS=Oryza sativa subsp. ... [more]
WOX8_ARATH3.295e-1350.00WUSCHEL-related homeobox 8 OS=Arabidopsis thaliana... [more]
WOX9_ARATH1.635e-1246.77WUSCHEL-related homeobox 9 OS=Arabidopsis thaliana... [more]
WOX5_ORYSJ1.635e-1238.04WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
WOX5_ORYSI1.635e-1238.04WUSCHEL-related homeobox 5 OS=Oryza sativa subsp. ... [more]
WOX1_ARATH2.135e-1245.45WUSCHEL-related homeobox 1 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M22_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189405 ID=CN189405; Name=CN189405; organism=Citrus sinensis; type=EST; length=727bp
GAGGGATCAGGGCAGTGAAGAGAGATATATTTGTGAGGCAGTGTGAACGA
AAGATTGGATGGAGTGGGATAATATTAGAGAAGCAGCGCAGCAGGAGACC
CAAACCCAGAACCAGAACCAGAACCATAGAGGAGGAGAGAATGATAATAA
TAGCGTTGTAAATGGAGTAATGTATGTGAAAGTGATGACTGATGAACAAC
TCGAGACTTTGAGGAAGCAGATTGCTGTCTATGCTACTATTTGCGAGCAA
CTTGTTGAGATGCATAAATCACTCTCTGCCCACCAAGATCTTGCAGCAGC
AGGAGGGCGGCTGGGGAATATATACTGTGACCCATTAATGACATCTGGTG
GTGGGCACAAGATCAGTGCCAGACAGAGATGGACTCCAACTCCAGTTCAG
CTTCGAATTCTGGAGAGCATTTTTGATCGAGGGACTGGGACTCCAAGCAA
GCAAAAGATCAAAGAGATTACAGTTGAACTCAGTCAGCACGGCCAAATCT
CCGAAACTAATGTCTACAATTGGTTCCAAAATAGGCGTGCTCGATCCAAA
AGGAAGCAGTTAGTGTCTTCTTCTGCCAACACTCTTCATAATGGTGGTGG
TGGTGGTGCTGGTGCTGGTGCTGGTGGTGCTGATTCAGAAGTAGAGACTG
ATGTTGATTCTCTGCTGCTGCATGACGAACACTAGACCACTAAACCAGAG
AATCTTTCTTCTGCTCATTCTACCTCT
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