CN189400

Overview
NameCN189400
Unique NameCN189400
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN189400 vs. ExPASy Swiss-Prot
Match: GLTR_ARATH (Uncharacterized glycosyltransferase At3g02350 OS=Arabidopsis thaliana GN=At3g02350 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.142e-19
Identity = 54/145 (37.24%), Postives = 81/145 (55.86%), Query Frame = 2 
Query:  164 LMEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLS-PAIIEVKALQHFDWFSKGKVPVLEAME 595
            + EQ T+ AK    +   +++ S+PK LHCLA+RL  E  +N       P     PA  D + +HY + SDNV+A SVV  S+V N+  P K V H++TDR     M+ WF + PL   A +E+K+++ F + +    PVL  +E
Sbjct:  191 VQEQLTK-AKKNGAVASLISAKSVPKSLHCLAMRLVGERISNPEKYKDAPPD---PAAEDPTLYHYAIFSDNVIAVSVVVRSVVMNAEEPWKHVFHVVTDRMNLAAMKVWFKMRPLDRGAHVEIKSVEDFKFLNSSYAPVLRQLE 331
[Close]
BLAST of CN189400 vs. ExPASy Swiss-Prot
Match: QUA1_ARATH (Glycosyltransferase QUASIMODO1 OS=Arabidopsis thaliana GN=QUA1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.186e-18
Identity = 52/143 (36.36%), Postives = 76/143 (53.15%), Query Frame = 2 
Query:  167 MEQRTRTAKIQEYLYRHVASSSIPKQLHCLALRLANEHSTNAAARLQLPSAELVPALVDNSYFHYVLASDNVLATSVVATSLVKNSLHPAKIVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALQHFDWFSKGKVPVLEAME 595
            + ++   AK Q      +A+ SIPK LHCLA+RL  E   +          +    L D + +HY + SDNV+A SVV  S VKN+  P K V H++TD+     MQ  F L     A +EVKA++ + + +   VPVL+ +E
Sbjct:  188 VNEQLTNAKKQGAFSSLIAAKSIPKGLHCLAMRLMEERIAHPEKYTD-EGKDRPRELEDPNLYHYAIFSDNVIAASVVVNSAVKNAKEPWKHVFHVVTDKMNLGAMQVMFKLKEYKGAHVEVKAVEDYTFLNSSYVPVLKQLE 329
The following BLAST results are available for this feature:
BLAST of CN189400 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GLTR_ARATH1.142e-1937.24Uncharacterized glycosyltransferase At3g02350 OS=A... [more]
QUA1_ARATH8.186e-1836.36Glycosyltransferase QUASIMODO1 OS=Arabidopsis thal... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001M19_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189400 ID=CN189400; Name=CN189400; organism=Citrus sinensis; type=EST; length=652bp
CCCTTTTTTTGATGCAAAACCTTTGCTATCAGCTTAGAGATATGGTACCA
CTCTAGCATATTTTATCTTTTACAAATTTGATTTAACAATAAGAGATGGG
TGATATATTCAGAACTTTCAGCAATGCTTAGACAAATCAACATTTATTAT
TTCACAGGTTACTCTCATGGAACAAAGGACTAGAACTGCCAAAATTCAAG
AATATTTATACCGCCATGTAGCATCGAGCAGCATACCAAAGCAGCTCCAC
TGCCTGGCATTAAGGCTGGCTAACGAACACTCCACCAATGCAGCTGCTCG
ACTCCAGCTACCCTCAGCGGAACTTGTTCCAGCCCTTGTCGACAACTCTT
ACTTCCACTACGTCCTTGCCTCCGACAATGTGCTTGCCACCTCTGTTGTT
GCCACATCACTAGTGAAGAACTCATTGCACCCTGCAAAAATTGTGTTGCA
CATAATAACAGACAGGAAAACTTACTATCCAATGCAGGCATGGTTTTCAC
TACACCCCTTATCACCAGCCATAATTGAGGTCAAGGCATTACAACATTTT
GACTGGTTTTCAAAGGGCAAGGTGCCTGTTTTGGAAGCAATGGAAAAGGA
TCAACGTGTGCGGGCACAGTTTCGAGGGGGCTCATCAGCCATTGTGGCAA
AT
back to top