CN189394

Overview
NameCN189394
Unique NameCN189394
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1949 contig Csv1_Contig1949:201..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189394 vs. ExPASy Swiss-Prot
Match: CCB12_ORYSJ (Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYCB1-2 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.820e-11
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = -3 
Query:  330 YGTAFPMKMDFDRQILFGFQRPTGAIPFSMLGLEVGTGSLEDFGFKHYLN 479
            YG+AF ++ D D QIL  FQRP GA+P SMLG E  TGSL+DFGF+ YLN
Sbjct:   59 YGSAFNIRKDLDAQILSKFQRPPGALPSSMLGYEALTGSLDDFGFEDYLN 108
The following BLAST results are available for this feature:
BLAST of CN189394 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CCB12_ORYSJ3.820e-1164.00Cyclin-B1-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M16_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189394 ID=CN189394; Name=CN189394; organism=Citrus sinensis; type=EST; length=544bp
CGCAAGCAAAAAAAAGGAACAGCTGGTTTAAATTTCAAGCGTCCATGATA
GGCAAATATGATAACAGGGGACAAAAAAAGGGTCCCATGTACTAAAAGCT
AGCTGTTTGATTTTCAGGGGATGTAAATAAATTCAGTCCCTAATGACACG
TTAAAATGTCTTCATTGAAAACGGGTACCAGCACATCTTAAAATCCTTCA
CTGAATCATTGAATAAAGCTGCATAAATCATATAAAGCTTGGGTAAGCCG
GGCCTTTGGAGAGGCCAATGCGCACTTCCATTCCATGATGCAGGTCTGCT
GGTCGGAAATATTCAAATTCACGAGGGTCATTCAAATAGTGCTTGAATCC
AAAATCTTCCAAGCTTCCTGTCCCAACCTCCAAACCAAGCATTGAAAATG
GAATTGCACCTGTAGGCCTCTGAAATCCAAAAAGAATTTGCCTATCAAAA
TCCATCTTCATTGGGAAAGCCGTTCCATAAGTGTTCAAAAAAATTCTTCT
CTTAATCTCCTCCTCCCTCTGCTTAACAAATTGGCATAGGGTTT
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