CN189391

Overview
NameCN189391
Unique NameCN189391
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5400 contig Csv1_Contig5400:19..644. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189391 vs. ExPASy Swiss-Prot
Match: TAF1A_ARATH (Transcription initiation factor TFIID subunit 1-A OS=Arabidopsis thaliana GN=HAF1 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.312e-38
Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = -2
Query:  323 RENTELSYLYLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSAAEAGI 625
            R   E+S L+LKPV+KKEAPDYLDI+E PMDLSTIR KVR++EY++RE FRHDVWQI +NAH YNDGR+P IPPLADQLLE+CDYL+D+Y + L  AE GI
Sbjct: 1815 RLKEEVSRLFLKPVSKKEAPDYLDIVENPMDLSTIRDKVRKIEYRNREQFRHDVWQIKYNAHLYNDGRNPGIPPLADQLLEICDYLLDDYEDQLKEAEKGI 1915          
BLAST of CN189391 vs. ExPASy Swiss-Prot
Match: TAF1B_ARATH (Transcription initiation factor TFIID subunit 1-B OS=Arabidopsis thaliana GN=HAF2 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.950e-35
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  323 ENTELSYLYLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSAAEAGI 622
            +   +SYL+LKPV KKEAP+YL+I++ PMDLSTIR KVRRMEY+DR+ FRHDVWQI FNAH YNDGR+ +IPPLAD+LL  CD L+DEY + L  AE GI
Sbjct: 1679 KEVNVSYLFLKPVTKKEAPNYLEIVKCPMDLSTIRDKVRRMEYRDRQQFRHDVWQIKFNAHLYNDGRNLSIPPLADELLVKCDRLLDEYRDELKEAEKGI 1778          
BLAST of CN189391 vs. ExPASy Swiss-Prot
Match: TAF1_ORYSJ (Transcription initiation factor TFIID subunit 1 OS=Oryza sativa subsp. japonica GN=TAF1 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.450e-34
Identity = 69/96 (71.88%), Postives = 78/96 (81.25%), Query Frame = -2
Query:  320 SYLYLKPVAKKEAPDYLDIIERPMDLSTIRGKVRRMEYKDREDFRHDVWQIAFNAHKYNDGRHPAIPPLADQLLELCDYLIDEYHESLSAAEAGIQ 607
            S+L+ KPV KKEAPDY DIIERPMDL TIR KVR+MEYK+REDFRHDV QIA NAH YN  RHP IPPLAD+LLELCDYL++E  + L  AE  I+
Sbjct: 1714 SFLFRKPVTKKEAPDYFDIIERPMDLGTIRDKVRKMEYKNREDFRHDVAQIALNAHTYNLNRHPHIPPLADELLELCDYLLEESADVLDDAEYAIE 1809          
The following BLAST results are available for this feature:
BLAST of CN189391 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
TAF1A_ARATH1.312e-3871.29Transcription initiation factor TFIID subunit 1-A ... [more]
TAF1B_ARATH3.950e-3568.00Transcription initiation factor TFIID subunit 1-B ... [more]
TAF1_ORYSJ7.450e-3471.88Transcription initiation factor TFIID subunit 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001M14_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001M14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189391 ID=CN189391; Name=CN189391; organism=Citrus sinensis; type=EST; length=626bp
TTTTTTTTTTTTTTTTTCCACCGAATATTTTTTGTAATCTATTAATATAA
AATATACAACAATAACGGCTTCCTACCATTGCTTCTGTAAAGCTACCAGG
AATCACAATTATGGATACAAAAAGGGGATTACACAACCAACAAATCTTTC
CAATTTTTTTACCAAGGACATATCCCCACTGAATTTACAGAACCTGGAAA
CTCCAACATGCGCTTTTCCTTTCCCTTTAAAGAAAAAAAAAAAAAATCTA
GTATTCTGGCATTCTCAGGCTAATAAACAACGGTAATCTGACAAAAGTGT
TTACCTAGGTATTCCGAGATTGAATACCAGCTTCAGCCGCTGATAAGCTC
TCATGATACTCATCTATTAAGTAGTCACAAAGTTCCAGAAGCTGATCTGC
AAGGGGAGGAATAGCGGGATGGCGTCCATCGTTGTACTTATGGGCATTAA
AGGCAATTTGCCATACATCGTGTCTAAAATCCTCTCGGTCCTTGTACTCC
ATCCGCCTCACCTTACCCCTGATTGTGGACAAATCCATGGGGCGCTCTAT
GATATCCAGGTAATCAGGAGCTTCTTTCTTGGCCACTGGTTTAAGGTAAA
GATATGACAACTCAGTATTTTCTCGG
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