DR908680

Overview
NameDR908680
Unique NameDR908680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length386
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7289 contig Csv1_Contig7289:1519..1904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.611e-50
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = -1 
Query:   93 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 386
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 2.611e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:   28 INQNPFPNRTSFFQSIRLSGC 90
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.611e-50
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = -1 
Query:   93 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 386
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 2.611e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:   28 INQNPFPNRTSFFQSIRLSGC 90
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.611e-50
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = -1 
Query:   93 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 386
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 2.611e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:   28 INQNPFPNRTSFFQSIRLSGC 90
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.611e-50
Identity = 86/98 (87.76%), Postives = 88/98 (89.80%), Query Frame = -1 
Query:   93 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 386
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 2.611e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:   28 INQNPFPNRTSFFQSIRLSGC 90
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: YCF72_SACOF (Uncharacterized protein ycf72 OS=Saccharum officinarum GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.826e-50
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = -1 
Query:   93 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 386
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 9.826e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:   28 INQNPFPNRTSFFQSIRLSGC 90
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: YCF72_SACHY (Uncharacterized protein ycf72 OS=Saccharum hybrid GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.826e-50
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = -1 
Query:   93 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 386
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 9.826e-50
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:   28 INQNPFPNRTSFFQSIRLSGC 90
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: YCF72_MAIZE (Uncharacterized protein ycf72 OS=Zea mays GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.670e-49
Identity = 85/98 (86.73%), Postives = 88/98 (89.80%), Query Frame = -1 
Query:   93 TTPLTTGRFPSQHLDPALPKLFWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 386
            TTPLTTGR PSQHLDPALPKLFWF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   18 TTPLTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 37.3502 bits (85), Expect = 1.670e-49
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = -3 
Query:   28 NQNPFPNRTSFFQSIRLSGC 87
            ++NPFPN TSFFQSIRLS C
Sbjct:  117 SKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.603e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 221
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 1.603e-45
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  129 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 219
[Close]
BLAST of DR908680 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 3.572e-45
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 1 
Query:  112 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 384
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVVRGV 221
The following BLAST results are available for this feature:
BLAST of DR908680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YCF72_ORYSJ2.611e-5087.76Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSI2.611e-5087.76Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSA2.611e-5087.76Uncharacterized protein ycf72 OS=Oryza sativa GN=y... [more]
YCF72_ORYNI2.611e-5087.76Uncharacterized protein ycf72 OS=Oryza nivara GN=y... [more]
YCF72_SACOF9.826e-5086.73Uncharacterized protein ycf72 OS=Saccharum officin... [more]
YCF72_SACHY9.826e-5086.73Uncharacterized protein ycf72 OS=Saccharum hybrid ... [more]
YCF72_MAIZE1.670e-4986.73Uncharacterized protein ycf72 OS=Zea mays GN=ycf72... [more]
RK2_CITSI1.603e-45100.0050S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2_BUXMI1.603e-45100.0050S ribosomal protein L2, chloroplastic OS=Buxus m... [more]
RK2_NYMAL3.572e-4598.9050S ribosomal protein L2, chloroplastic OS=Nymphae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16808 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_B10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908680 ID=DR908680; Name=DR908680; organism=Citrus sinensis; type=EST; length=386bp
GATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGCTTT
GGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAGATG
AATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATAGAA
ATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGTAGC
GAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTG
GGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTG
GGGAATGTTGGGGCGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATG
TTGGCTAGGGAAGCGTCCTGTAGTAAGAGGAGTAGT
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