DR908670

Overview
NameDR908670
Unique NameDR908670
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1841 contig Csv1_Contig1841:493..1089. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: OLP1_SOLLC (Osmotin-like protein OS=Solanum lycopersicum PE=1 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 9.226e-47
Identity = 82/100 (82.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFCH 301
            GVCPVVGCRA+LL +CP  LQ RS  GHGPVV CKS CEAF +DE CCRNHYNSPQTC+ SS+S+FFKHACPAT TYAHDSPSLMHECSSPRELKVIFCH
Sbjct:  153 GVCPVVGCRANLLESCPAVLQFRSHGGHGPVVGCKSACEAFKSDEFCCRNHYNSPQTCKPSSYSQFFKHACPATFTYAHDSPSLMHECSSPRELKVIFCH 252          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: TLPH_ARATH (Thaumatin-like protein OS=Arabidopsis thaliana GN=At1g18250 PE=2 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.175e-17
Identity = 43/99 (43.43%), Postives = 59/99 (59.60%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            G C   GC +DL   CP  LQVRS  G   VVACKS C AF + + CC   + +PQ+C+ +++S+ FK ACP   +YA+D P+ +  CS    + V FC
Sbjct:  142 GQCSYAGCVSDLNQMCPVGLQVRSRNGKR-VVACKSACSAFNSPQYCCTGLFGNPQSCKPTAYSKIFKVACPKAYSYAYDDPTSIATCSKANYI-VTFC 238          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.937e-16
Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            G C   GC +DL A CP  L+V        VVACKS CE F TD+ CCR   + P+TC  + +S  FK+ACP   +YA+D  +    C+     ++ FC
Sbjct:  144 GDCKYAGCVSDLNAACPDMLKVMD---QNNVVACKSACERFNTDQYCCRGANDKPETCPPTDYSRIFKNACPDAYSYAYDDETSTFTCTG-ANYEITFC 238          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: TLP1_CASSA (Thaumatin-like protein 1 OS=Castanea sativa GN=TL1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.200e-15
Identity = 36/99 (36.36%), Postives = 52/99 (52.53%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            G C    CRA++ A CP  LQV+       V+ACKS C AF   + CC   +++ +TC A+ +S  FK  CP   +YA+D  +    CS   +  + FC
Sbjct:  146 GDCKATSCRANVNAVCPAELQVKG--SDASVLACKSACTAFNQPQYCCTGAFDTARTCPATKYSRIFKQQCPQAYSYAYDDSTSTFTCSGAPDYVITFC 242          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: TLPH_ORYSJ (Thaumatin-like protein OS=Oryza sativa subsp. japonica GN=Os11g0706600 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.459e-15
Identity = 38/97 (39.18%), Postives = 49/97 (50.52%), Query Frame = 2
Query:    8 CPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            C    C AD+   CP  L+VR   G   V  C+S C A G D  CC   Y SP  CR + FS  FK  CP   +YA+D  + ++ C + R L + FC
Sbjct:  155 CGTAACGADVNVCCPSALEVRDREGR--VAGCRSACRAMGGDRYCCTGDYASPSACRPTIFSHLFKAICPRAYSYAYDDATSLNRCHAKRYL-ITFC 248          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.216e-14
Identity = 37/99 (37.37%), Postives = 51/99 (51.52%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            G C    C A++ A CP  LQ +     G VVAC S C  FGT + CC    N+P+TC  +++SE F +ACP   +YA+D       C+      + FC
Sbjct:  148 GDCKTASCPANVNAVCPSELQKKG--SDGSVVACLSACVKFGTPQYCCTPPQNTPETCPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFC 244          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.588e-14
Identity = 36/99 (36.36%), Postives = 53/99 (53.54%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            G C    C A++   CP  LQV++    G V++CKS C AFG  + CC    N+P+TC  + +SE F+  CP   +YA+D  +    CS   +  + FC
Sbjct:  149 GECKPSSCPANVNKVCPAPLQVKA--ADGSVISCKSACLAFGDSKYCCTPPNNTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 245          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: TP1B_MALDO (Thaumatin-like protein 1b (Fragment) OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.538e-14
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            G C    C A++   CP  LQV++    G V++CKS C AFG  + CC    ++P+TC  + +SE F+  CP   +YA+D  +    CS   +  + FC
Sbjct:  115 GECKPSSCPANVNMACPAQLQVKA--ADGSVISCKSACLAFGDSKYCCTPPNDTPETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFC 211          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.345e-13
Identity = 37/99 (37.37%), Postives = 48/99 (48.48%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            G C    C AD+   CP  LQV+     G V+ACKS C AF   + CC    + P+TC    +S+ FK  CP   +YA+D  S    CS      + FC
Sbjct:  149 GKCKASTCPADINKVCPAPLQVKG--SDGSVIACKSACLAFNQPKYCCTPPNDKPETCPPPDYSKLFKTQCPQAYSYAYDDKSSTFTCSGRPAYLITFC 245          
BLAST of DR908670 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.138e-12
Identity = 33/99 (33.33%), Postives = 46/99 (46.46%), Query Frame = 2
Query:    2 GVCPVVGCRADLLATCPQNLQVRSPPGHGPVVACKSGCEAFGTDELCCRNHYNSPQTCRASSFSEFFKHACPATMTYAHDSPSLMHECSSPRELKVIFC 298
            G C    C A++   CP  L  +     G V+ CKS C A    + CC   Y +P TC  + FS+ FK+ CP   +YA+D  S    C      ++ FC
Sbjct:  147 GDCNSTSCAANINTVCPAELSDKG--SDGSVIGCKSACLALNQPQYCCTGAYGTPDTCPPTDFSKVFKNQCPQAYSYAYDDKSSTFTCFGGPNYEITFC 243          
The following BLAST results are available for this feature:
BLAST of DR908670 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
OLP1_SOLLC9.226e-4782.00Osmotin-like protein OS=Solanum lycopersicum PE=1 ... [more]
TLPH_ARATH1.175e-1743.43Thaumatin-like protein OS=Arabidopsis thaliana GN=... [more]
PR5_ARATH4.937e-1640.40Pathogenesis-related protein 5 OS=Arabidopsis thal... [more]
TLP1_CASSA3.200e-1536.36Thaumatin-like protein 1 OS=Castanea sativa GN=TL1... [more]
TLPH_ORYSJ5.459e-1539.18Thaumatin-like protein OS=Oryza sativa subsp. japo... [more]
TLP_PRUAV1.216e-1437.37Glucan endo-1,3-beta-glucosidase OS=Prunus avium P... [more]
TP1A_MALDO1.588e-1436.36Thaumatin-like protein 1a OS=Malus domestica GN=TL... [more]
TP1B_MALDO3.538e-1435.35Thaumatin-like protein 1b (Fragment) OS=Malus dome... [more]
TLP1_PRUPE1.345e-1337.37Thaumatin-like protein 1 OS=Prunus persica PE=2 SV... [more]
TLP1_PYRPY1.138e-1233.33Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16798 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_B12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908670 ID=DR908670; Name=DR908670; organism=Citrus sinensis; type=EST; length=598bp
GGGCGTCTGTCCGGTGGTGGGTTGTCGCGCTGATCTGCTAGCCACGTGTC
CTCAGAACCTGCAGGTGAGGTCACCGCCGGGTCACGGCCCCGTGGTGGCA
TGTAAGAGTGGGTGTGAGGCGTTTGGTACGGACGAGCTGTGTTGTAGGAA
CCATTACAACAGTCCGCAGACATGTCGGGCTTCGAGCTTTTCGGAGTTCT
TCAAGCACGCTTGTCCAGCCACGATGACTTATGCCCATGATAGCCCTTCG
CTGATGCATGAGTGCTCCTCGCCACGTGAGCTCAAAGTTATTTTCTGTCA
CTAGAGAAGCATGAGAATAATAATAAGCTGGACCATCAAGCTTCACAGTG
CTTAGGATTGTTGTGTTTGTTTTCGTCAATTAGCAGTATCTTGCTTTTTA
ATTAATCTCGTAACTAAAAGGAGAAATTAAAAATGATCAATGTGAGCTTG
TGTCATGTTGGGTGTCATCAGTCTGTAAGTTGTGGTGTGTTTTGTAAGTT
CCAATTCAATTTGGAATGGGAATGTAATGAGTTTGATGTGTGGTATATTT
TCTTTTTTCATGAAAAAAGTAAAATAGAAATTATTTTTCTTCATTAAA
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