CN189339

Overview
NameCN189339
Unique NameCN189339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_CYAP8 (Protein translocase subunit secA OS=Cyanothece sp. (strain PCC 8801) GN=secA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.023e-16
Identity = 54/131 (41.22%), Postives = 70/131 (53.44%), Query Frame = -3
Query:  139 KAEGKSWT-----------YQEAKSFFSESVEMS------QSMNLKELQKLIDKQSAMYPLGPTVA----LTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 468
            K +GK+W+            QE +    E+V+ +      QS+   E ++ I   S   P   +V     + Y ++ K  E     E  EV  LGGLHVIGT  HESRRIDNQLRGRAGRQGDPGST+F +
Sbjct:  554 KKKGKNWSPSDADIFPTKMSQETEEILKEAVKFAVEQYGQQSLTELEAEEKIAIASENAPTDDSVVEKLRVVYKAIRKTYETVTDQEHDEVVELGGLHVIGTERHESRRIDNQLRGRAGRQGDPGSTKFFL 684          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_PELPD (Protein translocase subunit secA OS=Pelobacter propionicus (strain DSM 2379) GN=secA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.451e-16
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -3
Query:  145 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 315
            Y ++LK+ +  C+ E  EV RLGGLH+IGT  HESRRIDNQLRGR+GRQGDPGS+RF
Sbjct:  538 YQAILKNYKTVCAAEHDEVVRLGGLHIIGTERHESRRIDNQLRGRSGRQGDPGSSRF 594          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_SYNY3 (Protein translocase subunit secA OS=Synechocystis sp. (strain PCC 6803) GN=secA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.507e-16
Identity = 55/131 (41.98%), Postives = 71/131 (54.20%), Query Frame = -3
Query:  139 GKAEGKSWTY----------QEAKSFFSESVEMS-QSMNLKELQKLI--DKQSAMYPLGPT-------VALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 471
            GK + K+W            QE +    ++V+ +     L+ L +L   DK +     GPT       +   Y  + ++ EV  S E  EV  LGGLHVIGT  HESRR+DNQLRGRAGRQGDPGSTRF +
Sbjct:  551 GKKKVKTWQVSPDIYPTTISQETEDLLKKAVKFAVDQYGLQSLTELEAEDKLAIASEKGPTDDPVILKLREVYNQIRREYEVLTSAEHKEVVELGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFL 681          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_GEOUR (Protein translocase subunit secA OS=Geobacter uraniireducens (strain Rf4) GN=secA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.311e-15
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = -3
Query:  145 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 315
            Y  VL   +  C+NE  EV +LGGLH++GT  HESRRIDNQLRGR+GRQGDPGS+RF
Sbjct:  538 YERVLAQFKEQCANEHDEVVKLGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRF 594          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_SYNP6 (Protein translocase subunit secA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=secA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  139 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 315
            Y  V K+ E     E +EV  LGGLHVIGT  HESRR+DNQLRGRAGRQGDPGSTRF +
Sbjct:  635 YQQVRKEYEAVTKQEQAEVVELGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFL 693          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_SYNE7 (Protein translocase subunit secA OS=Synechococcus elongatus (strain PCC 7942) GN=secA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 40/59 (67.80%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  139 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 315
            Y  V K+ E     E +EV  LGGLHVIGT  HESRR+DNQLRGRAGRQGDPGSTRF +
Sbjct:  635 YQQVRKEYEAVTKQEQAEVVELGGLHVIGTERHESRRVDNQLRGRAGRQGDPGSTRFFL 693          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_CYAP7 (Protein translocase subunit secA OS=Cyanothece sp. (strain PCC 7424) GN=secA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.713e-15
Identity = 39/59 (66.10%), Postives = 45/59 (76.27%), Query Frame = -3
Query:  139 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 315
            Y  +  + E+  S E +EV  LGGLHV+GT  HESRRIDNQLRGRAGRQGDPGSTRF +
Sbjct:  626 YKKIRAEYEIFTSKEHNEVVELGGLHVMGTERHESRRIDNQLRGRAGRQGDPGSTRFFL 684          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_GLOVI (Protein translocase subunit secA OS=Gloeobacter violaceus GN=secA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.237e-15
Identity = 48/109 (44.04%), Postives = 65/109 (59.63%), Query Frame = -3
Query:  139 TYQEAKSFFSESVEM--SQSMNLKELQKLIDKQSAMYPLGPTVAL----TYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 447
            T Q+ K+    +V M  + S    ++++LI   S   P    V       Y ++ K+ +V    E  EV +LGGLHVIGT  HE+RR+DNQLRGR+GRQGDPGSTRF +
Sbjct:  583 TKQQLKAAVDYAVAMLGADSQPALQVEELIAVASEKGPTDDPVIQHLREIYRAIYKEYQVVTDREHDEVVKLGGLHVIGTERHEARRVDNQLRGRSGRQGDPGSTRFFL 691          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_GRATL (Protein translocase subunit secA OS=Gracilaria tenuistipitata var. liui GN=secA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.921e-15
Identity = 43/91 (47.25%), Postives = 60/91 (65.93%), Query Frame = -3
Query:  139 QSMNLKELQ----KLIDKQSAMYPLGPTVALTYLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMV 399
            ++++LK++Q    K+I  +   Y     +   YL +L + +  C  E  EV +LGGL+VIGT  HESRRIDNQLRGRAGRQGD G++RF +
Sbjct:  545 KNIDLKKIQYYIEKIIKNEHTKYSEEEKLQKLYLKILSEYKNICYQEKQEVLKLGGLYVIGTERHESRRIDNQLRGRAGRQGDIGASRFFL 635          
BLAST of CN189339 vs. ExPASy Swiss-Prot
Match: SECA_GEOMG (Protein translocase subunit secA OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=secA PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.816e-15
Identity = 36/57 (63.16%), Postives = 45/57 (78.95%), Query Frame = -3
Query:  145 YLSVLKDCEVHCSNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRF 315
            Y ++L   +  C+ E  EV +LGGLH++GT  HESRRIDNQLRGR+GRQGDPGS+RF
Sbjct:  538 YAAILAKYKAECAAEHDEVVKLGGLHILGTERHESRRIDNQLRGRSGRQGDPGSSRF 594          
The following BLAST results are available for this feature:
BLAST of CN189339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 483
Match NameE-valueIdentityDescription
SECA_CYAP82.023e-1641.22Protein translocase subunit secA OS=Cyanothece sp.... [more]
SECA_PELPD3.451e-1668.42Protein translocase subunit secA OS=Pelobacter pro... [more]
SECA_SYNY34.507e-1641.98Protein translocase subunit secA OS=Synechocystis ... [more]
SECA_GEOUR1.311e-1566.67Protein translocase subunit secA OS=Geobacter uran... [more]
SECA_SYNP61.713e-1567.80Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_SYNE71.713e-1567.80Protein translocase subunit secA OS=Synechococcus ... [more]
SECA_CYAP71.713e-1566.10Protein translocase subunit secA OS=Cyanothece sp.... [more]
SECA_GLOVI2.237e-1544.04Protein translocase subunit secA OS=Gloeobacter vi... [more]
SECA_GRATL2.921e-1547.25Protein translocase subunit secA OS=Gracilaria ten... [more]
SECA_GEOMG3.816e-1563.16Protein translocase subunit secA OS=Geobacter meta... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS06_0001L07_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189339 ID=CN189339; Name=CN189339; organism=Citrus sinensis; type=EST; length=572bp
TTTTTTTTTTTTTTTTAGAGTTTCTTATAATTTAAGTGTGAAAAGAGCCT
ACAGTTAACAGAAACAATTAATACTTGTACGGCTATGAGTTTATAATTTT
ATTCAAGAGGAAAACAAATCGCAAGAGGCACAGTACCTCACCATAAACCG
TGTTGATCCAGGATCCCCTTGCCGTCCTGCTCTGCCACGAAGCTGGTTAT
CTATTCTCCGAGACTCATGCAAAGATGTCCCAATCACATGAAGCCCCCCA
AGTCTTTTCACTTCAGACCCTTCATTGGAACAGTGAACTTCACAGTCCTT
TAAAACTGAGAGATAAGTCAGAGCTACAGTAGGGCCAAGAGGGTACATCG
CAGATTGTTTGTCAATGAGCTTCTGTAACTCTTTCAGATTCATCGACTGA
CTCATTTCCACAGATTCAGAGAAAAATGATTTTGCCTCTTGATATGTCCA
GCTCTTACCCTCAGCTTTGCCAACATATTTAGCCAATAGGGCTGCCTTAG
CTAGCAAAGCTAATGATGATGATCCAAGCTTTATCTCGGACAGTACCTTC
GGCGAGCTAGTTTTGTCATCAA
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