DR908666

Overview
NameDR908666
Unique NameDR908666
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: AGL19_ARATH (Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 3.746e-48
Identity = 103/170 (60.59%), Postives = 128/170 (75.29%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQXXXXXXXXXXXXXXXXXNKLRS*K-KGKILIEENTKLREQ 558
            MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAL+IFSPR KLYEFSS SI  TIERYQ++ K+IG N K   D+SQ A++ETS +  K+E LE++KRKLLG+G++ C+I+ELQQLENQ                  ++   K + + L++EN  L+E+
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSSSIAATIERYQRRIKEIGNNHK-RNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK 169          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 4.141e-47
Identity = 106/177 (59.89%), Postives = 127/177 (71.75%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF-SSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQXXXXXXXXXXXXXXXXXNKLRS*K-KGKILIEENTKLREQCGMPPR 576
            MVRGKT+MKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEF SS SI KT+ERYQK+ +D+G N K   D+SQ +K+ET  +  K+E LE++ RK++G+GL+  +I+ELQQLENQ                  +    K K + LI EN  L E+C M  R
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHK-RNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGR 176          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 2.684e-46
Identity = 100/172 (58.14%), Postives = 121/172 (70.35%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQXXXXXXXXXXXXXXXXXNKLRS*K-KGKILIEENTKLREQCG 564
            MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV+LIIFSP+GKLYEF+S ++  TI+RY + TKD      + E++ QH K E +NMM K+E LE +KRKLLG+G+  C+I+ELQQ+E Q                  ++   K K K L  EN KL E+ G
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWG 172          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: MAD50_ORYSJ (MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.524e-41
Identity = 100/181 (55.25%), Postives = 119/181 (65.75%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLE---NQXXXXXXXXXXXXXXXXXNKLRS*KKGKILIEENTKLREQC-GMPPRQA 582
            MVRGKTQMKRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRGKLYEF+S S  KTIERY+  TK+  I +K V+   +  K +   +  KLE LE  KRKLLG+ L+ C+I+EL  LE    +                  KLR  +K   L ++N +LRE+C   PP  A
Sbjct:    1 MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASASTQKTIERYRTYTKE-NIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLR--EKEMKLRKDNEELREKCKNQPPLSA 178          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 3.178e-39
Identity = 82/129 (63.57%), Postives = 106/129 (82.17%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC-SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLE 435
            MVRG+T++KRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRG+LYEF+S  S+ KTI+RY+  TKD  +N+K ++   Q  K++T  +  KLE L+ ++RK+LG+ LE C+I+EL+ LE
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCSIEELRGLE 128          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.994e-38
Identity = 81/129 (62.79%), Postives = 105/129 (81.40%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSC-SINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLE 435
            MVRG+T++KRIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVALI+FSPRG+LYEF+S  S+ KTI+RY+  TKD  +N+K ++   Q  K++T  +  KLE L+ ++RK+LG+ LE  +I+EL+ LE
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKD-HVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFSIEELRGLE 128          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: MAD17_ORYSJ (MADS-box transcription factor 17 OS=Oryza sativa subsp. japonica GN=MADS17 PE=1 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.020e-34
Identity = 78/131 (59.54%), Postives = 95/131 (72.52%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDI-GINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQ 441
            M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S  INKT+E+Y     +  G NS +     Q   +E S + TKLE L+ ++R +LG+ L P +I ELQQLE Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQ 131          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.206e-32
Identity = 75/169 (44.38%), Postives = 114/169 (67.46%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQXXXXXXXXXXXXXXXXXNKLRS*KKGKILIE-ENTKLRE 555
            M RGK ++KRIEN+T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+++ +I  TIERY+K   D    S + E ++ + ++E++ +  +++ ++ + R L+GD L   ++ EL+Q+EN+                 +++RS K   +L+E EN + RE
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENR------------LEKAISRIRSKKHELLLVEIENAQKRE 157          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: MADS6_ORYSJ (MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.095e-31
Identity = 74/130 (56.92%), Postives = 92/130 (70.77%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVAKRKLLGDGLEPCTIDELQQLENQ 441
            M RG+ ++KRIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALIIFS RGKLYEF S  I KT+ERYQ    +   ++  + + +Q    E S +  K E L+  +R LLG+ L P ++ ELQQLE Q
Sbjct:    1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGITKTLERYQHCCYNAQDSNNALSE-TQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSVKELQQLEKQ 129          
BLAST of DR908666 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.095e-31
Identity = 66/131 (50.38%), Postives = 98/131 (74.81%), Query Frame = 1
Query:   52 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSCSINKTIERYQKKTKDIGINSKIVEDHSQHAKEETSNMMTKLEFLEVA-KRKLLGDGLEPCTIDELQQLENQ 441
            M RGK ++KRIEN T+RQVTF KRRNGLLKKA+ELSVLCDAEVALI+FS RG+LYE+++ S+  T+ERY+K   D   +  + E ++QH ++E+S +  ++  L+ A  R ++GD +   ++ +L+Q+EN+
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENR 131          
The following BLAST results are available for this feature:
BLAST of DR908666 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 119
Match NameE-valueIdentityDescription
AGL19_ARATH3.746e-4860.59Agamous-like MADS-box protein AGL19 OS=Arabidopsis... [more]
AGL14_ARATH4.141e-4759.89Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
SOC1_ARATH2.684e-4658.14MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
MAD50_ORYSJ1.524e-4155.25MADS-box transcription factor 50 OS=Oryza sativa s... [more]
MAD56_ORYSI3.178e-3963.57MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSJ5.994e-3862.79MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD17_ORYSJ4.020e-3459.54MADS-box transcription factor 17 OS=Oryza sativa s... [more]
AGL11_ARATH2.206e-3244.38Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MADS6_ORYSJ1.095e-3156.92MADS-box transcription factor 6 OS=Oryza sativa su... [more]
MADS3_ORYSJ1.095e-3150.38MADS-box transcription factor 3 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16794 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-29_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908666 ID=DR908666; Name=DR908666; organism=Citrus sinensis; type=EST; length=598bp
AGAAAGAGATTAGGTTCTTCGCTCTTGACTCTCCGGAGTAGGAGAGTGAA
AATGGTGAGGGGCAAAACCCAGATGAAGAGAATAGAAAATGCAACAAGCA
GGCAAGTTACTTTCTCAAAGCGAAGAAATGGGCTGCTCAAAAAGGCCTTT
GAGTTATCGGTTCTTTGTGATGCCGAAGTTGCACTAATTATCTTCTCCCC
CAGAGGCAAGCTCTACGAGTTCTCTAGTTGTAGTATTAACAAGACCATAG
AACGCTATCAGAAGAAAACCAAAGATATTGGAATCAACTCCAAAATAGTA
GAAGATCATTCACAGCATGCCAAGGAAGAGACTTCAAACATGATGACGAA
GCTTGAGTTTCTTGAAGTGGCCAAAAGAAAACTCCTTGGAGATGGACTGG
AGCCATGTACAATTGATGAGCTACAACAGTTAGAGAACCAGTTGGAACGA
AGCTTAAGCAGAATTAGGGCAAGAAGAATCAGCTCTTCAGAGAACAAATT
GAGAAGCTGAAAGAAAGGAAAAATCCTCATTGAAGAAAATACGAAGCTGC
GAGAGCAATGTGGGATGCCACCGCGGCAAGCGTCAGAGGAGCCAGAAG
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