CX047024

Overview
NameCX047024
Unique NameCX047024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length420
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2038 contig Csv1_Contig2038:100..519. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.140e-19
Identity = 45/48 (93.75%), Postives = 47/48 (97.92%), Query Frame = -1
Query:  277 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 420
            FVGD+RSSIFDAKAGIALS KFVKLVSWYDNEWGYS+RVVDLIVHMSK
Sbjct:  290 FVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMSK 337          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.945e-19
Identity = 44/48 (91.67%), Postives = 46/48 (95.83%), Query Frame = -1
Query:  277 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSK 420
            FVGD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYSTRVVDLI+HMSK
Sbjct:  290 FVGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSTRVVDLIIHMSK 337          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.317e-19
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            FVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYSTRVVDLIVHM+  Q
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASVQ 337          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_PINSY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pinus sylvestris GN=GAPC PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.659e-19
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F+GDSRSSIFDA+AGIALS  FVKLVSWYDNEWGYS+RVVDLIVHM+ TQ
Sbjct:  291 FIGDSRSSIFDAQAGIALSDNFVKLVSWYDNEWGYSSRVVDLIVHMAATQ 340          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19
Identity = 44/50 (88.00%), Postives = 46/50 (92.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            FVGDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HM+KTQ
Sbjct:  288 FVGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMAKTQ 337          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_RANAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ranunculus acris GN=GAPC PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.391e-19
Identity = 43/50 (86.00%), Postives = 47/50 (94.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            F+GD+RSSIFDAKAGIAL+   VKLVSWYDNEWGYS+RVVDLIVHMSKTQ
Sbjct:  289 FIGDNRSSIFDAKAGIALNDNCVKLVSWYDNEWGYSSRVVDLIVHMSKTQ 338          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Nicotiana tabacum GN=GAPC PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = -1
Query:  280 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMS 420
            FVGDSRSSIFDAKAGIALSK FVKLVSWYDNEWGYS+RV+DLI HM+
Sbjct:  277 FVGDSRSSIFDAKAGIALSKNFVKLVSWYDNEWGYSSRVIDLICHMA 323          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            FVGDSRSSIFDAKAGIAL+  FVKLV+WYDNEWGYS RV+DLI HM+KTQ
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 42/50 (84.00%), Postives = 46/50 (92.00%), Query Frame = -1
Query:  271 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKTQ 420
            FVGDSRSSIFDAKAGIAL+  FVKLV+WYDNEWGYS RV+DLI HM+KTQ
Sbjct:  288 FVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337          
BLAST of CX047024 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.646e-18
Identity = 41/49 (83.67%), Postives = 46/49 (93.88%), Query Frame = -1
Query:  274 FVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMSKT 420
            F+GD+RSSIFDAKAGIALS  FVKLVSWYDNEWGYS+RV+DLIVHM+ T
Sbjct:  291 FIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDLIVHMAST 339          
The following BLAST results are available for this feature:
BLAST of CX047024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
G3PC_ARATH1.140e-1993.75Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_SINAL1.945e-1991.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ANTMA3.317e-1988.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PINSY5.659e-1986.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PX_HORVU7.391e-1988.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_RANAC7.391e-1986.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TOBAC1.646e-1889.36Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.646e-1884.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.646e-1884.00Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI1.646e-1883.67Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_11F10_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-11F10-L20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX047024 ID=CX047024; Name=CX047024; organism=Citrus sinensis; type=EST; length=420bp
TTGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTGTTTTCTCGCTAA
CAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACTACAAGGGAAAAT
CTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGATAATGTCTTGGAA
ACAATTTTATTTAAACTCAGACCCTCTACATAGAAACACAAACACCACAT
TTAGCACAAAGAAACACCACACTTAGCACAACTAAGCGTGTTACATACTC
AAGCCACGCCGAGTAAGTTACTGGGTCTTCGACATGTGGACAATCAAATC
CACCACACGAGTACTGTAGCCCCACTCATTGTCATACCATGAGACAAGCT
TCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCATCAAAGATACTT
GACCTACTGTCACCAACAAA
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