DR908661

Overview
NameDR908661
Unique NameDR908661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DR908661 vs. ExPASy Swiss-Prot
Match: RAD17_ARATH (Cell cycle checkpoint protein RAD17 OS=Arabidopsis thaliana GN=RAD17 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 8.364e-40
Identity = 88/186 (47.31%), Postives = 112/186 (60.22%), Query Frame = 2 
Query:    2 DAPEKVLSQAHGQARPVLDFLHENFLDFISEDAIDDAWAVASYXXXXXXXXXXFRGRLVRYNEADNVLQSAAASVAARGVLFGNSHPVPPRWHAIRKPKLWRVDQSSXXXXXXXXXXXFMAWDGSISADVYNGSSSSDVSVLATEYAPALKWLGNRTSVGLEAHEAPIPDNETQDVDIFEGMSLDD 559
            DAPEKVLSQAHGQA  V+DFLHEN LDF+S+ AI+DAW V+SY           RG++  +N  ++V QSA ASVA RGVL+GN  P   RWH IRKPKLW+V+QSS            ++         Y GS  +D+SV+ATEY+P LKWL  R S   +A      + + +D DI E   + D
Sbjct:  424 DAPEKVLSQAHGQAGRVVDFLHENVLDFVSDGAIEDAWCVSSYLADADLLLADIRGKMSGHNNTEDVPQSAGASVAVRGVLYGNKQPCSSRWHVIRKPKLWQVEQSSIQTKKNLREQRNIS---------YEGSRVADISVMATEYSPVLKWLSYRASP--DAFPGMGEETDEEDSDISEDDEIQD 598
The following BLAST results are available for this feature:
BLAST of DR908661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RAD17_ARATH8.364e-4047.31Cell cycle checkpoint protein RAD17 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16789 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-32_B04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908661 ID=DR908661; Name=DR908661; organism=Citrus sinensis; type=EST; length=599bp
GGATGCTCCAGAAAAGGTTCTCTCTCAAGCGCATGGGCAAGCAAGACCTG
TTCTTGATTTTTTACATGAAAATTTTCTAGATTTTATCAGTGAGGATGCA
ATCGATGATGCTTGGGCTGTGGCTTCATATTTAAGTGATGCTGACTTACT
TCTTGCTTCATTCCGTGGAAGGCTGGTTAGATATAATGAGGCAGACAATG
TTCTACAATCTGCTGCGGCTTCAGTTGCTGCTCGTGGAGTACTATTTGGA
AATTCTCATCCAGTGCCTCCTAGGTGGCATGCTATCCGTAAGCCAAAGCT
CTGGCGAGTGGACCAATCTTCTCTGCAAAAAAAGAAGGAGTTGCTAAAGA
AGAAGTTTATGGCTTGGGATGGATCAATCTCAGCTGATGTTTACAATGGG
TCAAGCTCATCTGATGTGTCAGTTCTTGCGACCGAGTATGCACCTGCATT
GAAATGGCTTGGGAACAGAACATCAGTTGGTCTTGAAGCTCATGAGGCGC
CAATTCCTGATAATGAAACACAAGATGTTGACATTTTTGAGGGCATGAGT
TTGGATGACCATGAAAGTGAGATATCTAATTATGAATCAAAGGATGACT
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