DR908657

Overview
NameDR908657
Unique NameDR908657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length600
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11673 contig Csv1_Contig11673:518..1117. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSMD3_TOBAC (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Nicotiana tabacum GN=21D7 PE=2 SV=1)

HSP 1 Score: 342.428 bits (877), Expect = 1.017e-93
Identity = 176/200 (88.00%), Postives = 180/200 (90.00%), Query Frame = 1
Query:    1 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVA 600
            K+YNEAKACSSASIARLK +NRRTVDVLA+RLYFYYSLCYELTGDLAEIRG LLALHRIATLRHDELGQET               DQAEKLRSKAPRFEAHSNQQF RYLFYLGKIRTIQLEYTDAKESLLQAARKAP AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELF+ VA
Sbjct:  133 KKYNEAKACSSASIARLKTVNRRTVDVLASRLYFYYSLCYELTGDLAEIRGYLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFSRYLFYLGKIRTIQLEYTDAKESLLQAARKAPQAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRKVA 332          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSMD3_DAUCA (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2)

HSP 1 Score: 340.887 bits (873), Expect = 2.960e-93
Identity = 173/200 (86.50%), Postives = 181/200 (90.50%), Query Frame = 1
Query:    1 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSVA 600
            K+Y+EAKACSSASIAR+KN+NRRTV+VLA+RLYFYYSL YELTGDLAEIRGNLLALHRIATLRHDELGQET               DQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKES LQAARKAPVAALGFRVQCNKWA+IVRLLLGEIPERTVFMQKGMEKALRPYF LTNAVRIGDLELF+ VA
Sbjct:  134 KKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSLSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESXLQAARKAPVAALGFRVQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFXLTNAVRIGDLELFRXVA 333          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSD31_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 3a OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3)

HSP 1 Score: 333.183 bits (853), Expect = 6.172e-91
Identity = 166/199 (83.42%), Postives = 178/199 (89.45%), Query Frame = 1
Query:    1 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSV 597
            K+YNEAKACSSASIARLKN+NRRT+DV+A+RLYFYYSL YE TGDLAEIRG LLALH  ATLRHDELGQET               DQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAP+AALGFR+QCNKWAI+VRLLLGEIPER++F QKGMEKALRPYFELTNAVRIGDLELF++V
Sbjct:  133 KKYNEAKACSSASIARLKNVNRRTIDVIASRLYFYYSLSYEQTGDLAEIRGTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLLGEIPERSIFTQKGMEKALRPYFELTNAVRIGDLELFRTV 331          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSD32_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 3b OS=Arabidopsis thaliana GN=At1g75990 PE=2 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 1.858e-87
Identity = 161/199 (80.90%), Postives = 173/199 (86.93%), Query Frame = 1
Query:    1 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSV 597
            K+YNEAK CS+ASIARLK++NRRTVDV+A++LYFYYSL YELT DLAEIR  LLALH  ATLRHDELGQET               DQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVA+LGFR+QCNKWAIIVRLLLGEIPER++F QKGMEK LRPYFELTNAVRIGDLELF  +
Sbjct:  132 KKYNEAKVCSTASIARLKSVNRRTVDVIASKLYFYYSLSYELTNDLAEIRSTLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLLGEIPERSIFTQKGMEKTLRPYFELTNAVRIGDLELFGKI 330          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSMD3_DICDI (26S proteasome non-ATPase regulatory subunit 3 OS=Dictyostelium discoideum GN=psmD3 PE=1 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.884e-39
Identity = 90/197 (45.69%), Postives = 124/197 (62.94%), Query Frame = 1
Query:    1 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELF 588
            K+Y +A  CSSA +  +++  R T+  L+++++FYYSL YE+T +L E+R  LL+  R ATLRH++ GQ T               +QA+KL +     E+ S+ QF RY +Y G+IR IQLEY ++ + L QA RKAP   A GFR    K   IV+LL+GEIPER  F QK ++ AL+PYF LT AVR+GDL  F
Sbjct:  147 KKYEDATKCSSALMETVQSNTRITLYPLSSKIFFYYSLSYEMTNNLHEVRSTLLSALRTATLRHNDEGQATIINLLLRNYLEYNLFEQADKLLANTQFPESASSNQFARYFYYQGRIRAIQLEYAESFKFLTQAIRKAPQNTAGGFRRTVYKLLSIVQLLMGEIPERNTFSQKQLKIALKPYFHLTEAVRVGDLGSF 343          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSMD3_HUMAN (26S proteasome non-ATPase regulatory subunit 3 OS=Homo sapiens GN=PSMD3 PE=1 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.008e-37
Identity = 86/200 (43.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:    1 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSV 597
            KRY EA+  S   + ++   NRR +D++AA+ Y+Y++  YE    L  +R  L A  R ATLRHD  GQ T               DQAEKL SK+   E  +N ++ RYL+Y G+I+ IQLEY++A+ ++  A RKAP   A+GF+   +K  I+V LLLGEIP+R  F Q  ++++L PYF LT AVR G+L  F  V
Sbjct:  179 KRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQV 378          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSMD3_BOVIN (26S proteasome non-ATPase regulatory subunit 3 OS=Bos taurus GN=PSMD3 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.008e-37
Identity = 86/200 (43.00%), Postives = 120/200 (60.00%), Query Frame = 1
Query:    1 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSV 597
            KRY EA+  S   + ++   NRR +D++AA+ Y+Y++  YE    L  +R  L A  R ATLRHD  GQ T               DQAEKL SK+   E  +N ++ RYL+Y G+I+ IQLEY++A+ ++  A RKAP   A+GF+   +K  I+V LLLGEIP+R  F Q  ++++L PYF LT AVR G+L  F  V
Sbjct:  179 KRYKEAQKISDDLMQKISTQNRRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDTDGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQV 378          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSMD3_ANOST (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles stephensi GN=DOXA2 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 6.702e-37
Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 1
Query:   13 EAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSV 597
            +A  CS   +A++   NRR++D++AA+ YFY+S   EL  DL  IR  L +  R ATLR+D  GQ                 DQA+KL +K+   E  SN +  R+L+YLG+I+  +LEY+ A + L+QA RKAP  AA+GFR    K  I+V LLLG+IPER VF Q  + ++L PYF+LT AVR+G+L+ F  V
Sbjct:  150 KATKCSQDLMAKIVGQNRRSLDLIAAKCYFYHSRVSELNNDLESIRSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEV 345          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSMD3_MOUSE (26S proteasome non-ATPase regulatory subunit 3 OS=Mus musculus GN=Psmd3 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.143e-36
Identity = 85/200 (42.50%), Postives = 119/200 (59.50%), Query Frame = 1
Query:    1 KRYNEAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSV 597
            KRY EA+  S   + ++   N R +D++AA+ Y+Y++  YE    L  +R  L A  R ATLRHD  GQ T               DQAEKL SK+   E  +N ++ RYL+Y G+I+ IQLEY++A+ ++  A RKAP   A+GF+   +K  I+V LLLGEIP+R  F Q  ++++L PYF LT AVR G+L  F  V
Sbjct:  175 KRYKEAQKISDDLMQKISTQNHRALDLVAAKCYYYHARVYEFLDKLDVVRSFLHARLRTATLRHDADGQATLLNLLLRNYLHYSLYDQAEKLVSKSVFPEQANNNEWARYLYYTGRIKAIQLEYSEARRTMTNALRKAPQHTAVGFKQTVHKLLIVVELLLGEIPDRLQFRQPSLKRSLMPYFLLTQAVRTGNLAKFNQV 374          
BLAST of DR908657 vs. ExPASy Swiss-Prot
Match: PSMD3_ANOGA (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Anopheles gambiae GN=Dox-A2 PE=3 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.143e-36
Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 1
Query:   13 EAKACSSASIARLKNMNRRTVDVLAARLYFYYSLCYELTGDLAEIRGNLLALHRIATLRHDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPV-AALGFRVQCNKWAIIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFKSV 597
            +A  CS   +A++   NRR++D++AA+ YFY+S   EL  DL  IR  L +  R ATLR+D  GQ                 DQA+KL +K+   E  SN +  R+L+YLG+I+  +LEY+ A + L+QA RKAP  AA+GFR    K  I+V LLLG+IPER VF Q  + ++L PYF+LT AVR+G+L+ F  V
Sbjct:  146 KATKCSQDLMAKVVGQNRRSLDLIAAKSYFYHSRVAELNNDLESIRSFLHSRLRTATLRNDFEGQAVLINCLLRNYLHYSLYDQADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQALRKAPQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFGEV 341          
The following BLAST results are available for this feature:
BLAST of DR908657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSMD3_TOBAC1.017e-9388.00Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD3_DAUCA2.960e-9386.50Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD31_ARATH6.172e-9183.42Probable 26S proteasome non-ATPase regulatory subu... [more]
PSD32_ARATH1.858e-8780.90Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD3_DICDI1.884e-3945.6926S proteasome non-ATPase regulatory subunit 3 OS=... [more]
PSMD3_HUMAN3.008e-3743.0026S proteasome non-ATPase regulatory subunit 3 OS=... [more]
PSMD3_BOVIN3.008e-3743.0026S proteasome non-ATPase regulatory subunit 3 OS=... [more]
PSMD3_ANOST6.702e-3744.39Probable 26S proteasome non-ATPase regulatory subu... [more]
PSMD3_MOUSE1.143e-3642.5026S proteasome non-ATPase regulatory subunit 3 OS=... [more]
PSMD3_ANOGA1.143e-3644.39Probable 26S proteasome non-ATPase regulatory subu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16785 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-44_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908657 ID=DR908657; Name=DR908657; organism=Citrus sinensis; type=EST; length=600bp
AAGAGATACAATGAGGCTAAAGCTTGTTCATCGGCAAGCATTGCACGGTT
GAAGAACATGAATAGGAGAACTGTTGATGTATTAGCTGCCAGACTTTACT
TCTATTACTCTCTTTGCTATGAACTCACTGGTGATCTTGCTGAAATTAGA
GGGAATCTACTTGCCCTCCACCGAATTGCAACATTGCGCCATGATGAGCT
GGGGCAGGAAACACTTCTCAACCTGCTACTTCGCAATTACCTCCATTACA
ATTTGTATGATCAAGCTGAGAAACTTAGGTCAAAGGCACCTCGATTTGAA
GCTCACTCAAACCAGCAGTTTTGTCGATACCTCTTTTACTTGGGAAAGAT
TAGGACAATACAGCTGGAGTACACAGATGCCAAAGAATCCCTCCTTCAAG
CTGCTCGGAAAGCCCCCGTTGCAGCCCTTGGCTTCCGAGTTCAATGCAAC
AAGTGGGCAATCATTGTCCGATTATTGCTAGGAGAAATTCCTGAGAGGAC
TGTCTTTATGCAGAAAGGCATGGAGAAGGCTTTGAGGCCATATTTTGAGC
TTACGAATGCTGTGCGCATTGGGGATTTGGAGCTATTTAAGTCAGTTGCT
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