CN189311

Overview
NameCN189311
Unique NameCN189311
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13665 contig Csv1_Contig13665:325..797. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 4.658e-51
Identity = 96/101 (95.05%), Postives = 100/101 (99.01%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDR+R++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE LDWLSNNIANKA
Sbjct:   81 YFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_ARATH (ADP-ribosylation factor 1 OS=Arabidopsis thaliana GN=ARF1 PE=1 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 6.083e-51
Identity = 96/101 (95.05%), Postives = 100/101 (99.01%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDRDR++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE LDWLSNNIA+KA
Sbjct:   81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF2_ARATH (ADP-ribosylation factor 2 OS=Arabidopsis thaliana GN=ARF2-A PE=2 SV=3)

HSP 1 Score: 199.134 bits (505), Expect = 7.944e-51
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDRDR++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE LDWLSNNIA KA
Sbjct:   81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIAGKA 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_CATRO (ADP-ribosylation factor 1 OS=Catharanthus roseus GN=ARF1 PE=2 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 1.038e-50
Identity = 96/101 (95.05%), Postives = 99/101 (98.02%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDRDR++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDK GLHSLRQRHWYIQSTCATSGEGLYE LDWLSNNIANKA
Sbjct:   81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKHGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKA 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF_VIGUN (ADP-ribosylation factor OS=Vigna unguiculata GN=ARF PE=2 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 1.770e-50
Identity = 95/101 (94.06%), Postives = 100/101 (99.01%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDRDR++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE L+WLSNNIA+KA
Sbjct:   81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLEWLSNNIASKA 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_ORYSJ (ADP-ribosylation factor 1 OS=Oryza sativa subsp. japonica GN=Os01g0813400 PE=2 SV=3)

HSP 1 Score: 197.978 bits (502), Expect = 1.770e-50
Identity = 95/101 (94.06%), Postives = 100/101 (99.01%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDR+R++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE LDWLSNNIA+KA
Sbjct:   81 YFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKA 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 2.311e-50
Identity = 94/100 (94.00%), Postives = 99/100 (99.00%), Query Frame = -2
Query:  173 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANK 472
            YFQNTQGLIFV+DSNDR+R++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE LDWLSNN+ANK
Sbjct:   81 YFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNLANK 180          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 196.438 bits (498), Expect = 5.149e-50
Identity = 95/101 (94.06%), Postives = 99/101 (98.02%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDRDR+ EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYE LDWLSNNI++KA
Sbjct:   81 YFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISSKA 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF1_DAUCA (ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1 PE=2 SV=2)

HSP 1 Score: 196.052 bits (497), Expect = 6.725e-50
Identity = 94/101 (93.07%), Postives = 99/101 (98.02%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDRDR++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEI DKLGLHSLRQRHWYIQSTCATSGEGLYE LDWLSNNIA+K+
Sbjct:   81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEIIDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIASKS 181          
BLAST of CN189311 vs. ExPASy Swiss-Prot
Match: ARF_MAIZE (ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 SV=2)

HSP 1 Score: 192.2 bits (487), Expect = 9.711e-49
Identity = 92/101 (91.09%), Postives = 99/101 (98.02%), Query Frame = -2
Query:  170 YFQNTQGLIFVLDSNDRDRILEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEVLDWLSNNIANKA 472
            YFQNTQGLIFV+DSNDRDR++EARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGL+SLRQRHWYIQSTCAT+GEGLYE LDWLS+NIA K+
Sbjct:   81 YFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLNSLRQRHWYIQSTCATTGEGLYEGLDWLSSNIATKS 181          
The following BLAST results are available for this feature:
BLAST of CN189311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
ARF2_ORYSJ4.658e-5195.05ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_ARATH6.083e-5195.05ADP-ribosylation factor 1 OS=Arabidopsis thaliana ... [more]
ARF2_ARATH7.944e-5195.05ADP-ribosylation factor 2 OS=Arabidopsis thaliana ... [more]
ARF1_CATRO1.038e-5095.05ADP-ribosylation factor 1 OS=Catharanthus roseus G... [more]
ARF_VIGUN1.770e-5094.06ADP-ribosylation factor OS=Vigna unguiculata GN=AR... [more]
ARF1_ORYSJ1.770e-5094.06ADP-ribosylation factor 1 OS=Oryza sativa subsp. j... [more]
ARF1_CHLRE2.311e-5094.00ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_SALBA5.149e-5094.06ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF1_DAUCA6.725e-5093.07ADP-ribosylation factor 1 OS=Daucus carota GN=ARF1... [more]
ARF_MAIZE9.711e-4991.09ADP-ribosylation factor OS=Zea mays GN=ARF1 PE=2 S... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001K15_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189311 ID=CN189311; Name=CN189311; organism=Citrus sinensis; type=EST; length=473bp
TATCCAACCAACAATTCTTCTATTACAATATAATTGTAAAGATCCTAGGA
CCAAAACAACACGACAACCCAAACGTCTCAAACAAAAAGGGTTAAAAAGA
AAAAAAAATAGATAATATTCACCCCTGCATCCAGAATTGCCAGTCCGCAA
AAAGATCTTAACAGCTTCAGGCCTTGTTAGCGATGTTGTTGGAGAGCCAA
TCCAGAACTTCATAAAGACCCTCACCAGAGGTTGCACAGGTGCTCTGGAT
GTACCAGTGGCGCTGCCTGAGGGAGTGGAGGCCAAGCTTATCAGTAATCT
CAGCAGCATTCATTGCATTTGGAAGATCCTGTTTGTTAGCAAATACAAGC
AACACTGCATCTCGCAGCTCATCCTCATTCAACATCCTATGCAATTCATC
CCTTGCTTCTAAAATACGGTCTCTGTCATTGCTGTCCAAAACAAAAATGA
GACCTTGAGTGTTCTGGAAATAA
back to top