DR908653

Overview
NameDR908653
Unique NameDR908653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12346 contig Csv1_Contig12346:636..1239. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908653 vs. ExPASy Swiss-Prot
Match: ASD1_ARATH (Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thaliana GN=ASD1 PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 63/114 (55.26%), Postives = 88/114 (77.19%), Query Frame = 3 
Query:    3 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLENAAKDMDVVISPYSFTSFDLLRESVAMKMEGAD 344
            +S+VASAISW++  N K ++RIK VN  +NS N++V V GL PN +++SGS KT LTS+N+ DENSF++P KVVP  +LLE A +DM VV+ P+SF+SFDLL+ES  ++M  +D
Sbjct:  557 TSLVASAISWKN--NGKDYIRIKAVNFGANSENMQVLVTGLDPNVMRVSGSKKTVLTSTNVMDENSFSQPEKVVPHESLLELAEEDMTVVLPPHSFSSFDLLKESAKIRMPISD 668
[Close]
BLAST of DR908653 vs. ExPASy Swiss-Prot
Match: ASD2_ARATH (Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thaliana GN=ASD2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.005e-17
Identity = 53/106 (50.00%), Postives = 71/106 (66.98%), Query Frame = 3 
Query:    3 SSIVASAISWEDSENAKSFLRIKVVNLRSNSVNLKVSVDGLGPNSIKLSGSTKTQLTSSNLKDENSFTEPNKVVPSLTLLE-NAAKDMDVVISPYSFTSFDLLRES 317
            SS+ ASAIS++   N K +++IK VN    SVNLKV+V GL     K  GS K  LTS+++ DENSF+ PN +VP  +LLE    +D+  V+ P+SF+SFDLL ES
Sbjct:  556 SSVEASAISFQT--NGKDYIQIKAVNFGEQSVNLKVAVTGL---MAKFYGSKKKVLTSASVMDENSFSNPNMIVPQESLLEMTEQEDLMFVLPPHSFSSFDLLTES 656
The following BLAST results are available for this feature:
BLAST of DR908653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ASD1_ARATH9.591e-2855.26Alpha-L-arabinofuranosidase 1 OS=Arabidopsis thali... [more]
ASD2_ARATH2.005e-1750.00Alpha-L-arabinofuranosidase 2 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16781 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-43_D08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908653 ID=DR908653; Name=DR908653; organism=Citrus sinensis; type=EST; length=601bp
CTAGTTCAATTGTCGCATCTGCAATTTCTTGGGAAGACTCAGAGAATGCC
AAAAGTTTCCTGAGAATAAAGGTTGTGAACCTCAGGAGCAATTCAGTTAA
TCTCAAAGTTTCTGTGGATGGGTTGGGGCCAAATTCCATAAAATTATCTG
GATCAACAAAGACTCAGCTCACGTCTAGCAATTTGAAGGATGAGAATTCC
TTCACGGAGCCAAACAAGGTGGTACCGAGCCTAACACTACTTGAAAATGC
TGCCAAGGACATGGATGTTGTAATCTCGCCATATTCTTTCACTTCGTTTG
ATTTGTTAAGAGAATCAGTCGCTATGAAGATGGAGGGGGCTGATTCTTTC
TCCAGATCTTCAATTTAAGGAATAAGTATATTTTAACGCGATAATGACAC
CAACTTTACTTACATGCTGATTGGTTGGTCAATTGCTGCGAAGGATATGG
ACAACGCTTGTTGTTTCGTTGCTTCAATGTCCCTTTTTTTATTATTTAAT
ATTTATAAATCAAGCTTGTAAATTTATTTACAAGTGCTTCTATTAGGACA
TGTCATCTATATGCAGAAATTATAAACGAATATGTCATATATGTTTCACT
C
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